JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LMO2_chr11_33853576_33897076	0/0	t0015	1399	2	2	0	0	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0016	1398	2	2	0	0	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0017	1398	2	0	1	1	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0018	1399	2	2	0	0	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	1/0	t0019	1398	1	0	0	0	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0020	1398	1	0	0	0	0	1	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0021	1399	1	1	0	0	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0022	1398	1	0	1	0	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0023	1398	1	0	0	1	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0024	1399	1	0	1	0	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0025	1399	1	0	0	0	0	1	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0026	1399	1	0	0	1	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0027	1399	1	1	0	0	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0028	1398	1	0	0	1	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0029	1396	1	1	0	0	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	t0030	1399	1	0	0	0	0	1	copy fasta	LMO2	chr11	33853576	33897076
LMO3_chr12_16543372_16611162	1/1	t0001	2956	331	72	58	158	9	32	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0002	2956	3	3	0	0	0	0	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0003	2956	2	2	0	0	0	0	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0004	2956	1	0	0	1	0	0	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0005	2956	1	0	0	1	0	0	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0006	2956	1	0	0	0	1	0	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0007	2956	1	1	0	0	0	0	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0008	2956	1	0	0	1	0	0	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0009	2956	1	0	0	1	0	0	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0010	2956	1	1	0	0	0	0	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0011	2956	1	1	0	0	0	0	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0012	2956	1	0	1	0	0	0	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0013	2956	1	0	0	1	0	0	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0014	2956	1	0	0	1	0	0	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0015	2956	1	0	0	0	1	0	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0016	2956	1	0	0	1	0	0	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0017	2956	1	0	0	1	0	0	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0018	2956	1	1	0	0	0	0	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0019	2956	1	0	0	0	1	0	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0020	2956	1	0	1	0	0	0	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	t0021	2956	1	1	0	0	0	0	copy fasta	LMO3	chr12	16543372	16611162
LMO4_chr1_87323880_87353923	1/0	t0001	4496	160	23	40	75	3	18	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0002	4491	29	0	8	20	0	1	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/1	t0003	4496	27	0	1	22	0	3	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0004	4495	24	5	7	6	1	5	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0005	4501	9	8	1	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0006	4494	7	0	0	3	1	3	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0007	4497	6	0	1	2	1	2	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0008	4497	6	0	0	5	0	1	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0009	4490	6	0	0	5	0	1	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0010	4496	5	0	3	0	1	1	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0011	4496	5	5	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0012	4493	4	2	2	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0013	4496	4	4	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923