JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LMO4_chr1_87323880_87353923	0/0	t0014	4496	4	0	0	4	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0015	4486	4	4	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0016	4496	4	4	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0017	4493	4	4	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0018	4489	4	0	0	3	0	1	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0019	4491	3	3	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0020	4496	3	0	2	0	0	1	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0021	4495	3	3	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0022	4490	3	3	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0023	4495	3	0	3	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0024	4495	3	0	1	2	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0025	4494	3	0	0	3	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0026	4497	2	0	1	0	0	1	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0027	4490	2	2	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0028	4496	2	2	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0029	4496	2	0	1	0	1	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0030	4492	2	2	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0031	4497	2	0	0	0	0	2	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0032	4495	2	1	0	1	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0033	4495	2	2	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0034	4491	2	2	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0035	4495	2	0	1	0	0	1	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0036	4494	2	2	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0037	4491	2	2	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0038	4497	1	0	1	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0039	4495	1	0	1	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0040	4498	1	1	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0041	4501	1	1	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0042	4501	1	0	0	0	1	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0043	4501	1	1	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0044	4496	1	1	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0045	4492	1	0	0	1	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0046	4496	1	1	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0047	4496	1	0	0	1	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0048	4496	1	0	0	1	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0049	4496	1	0	0	1	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0050	4496	1	0	1	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0051	4496	1	1	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0052	4496	1	1	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0053	4496	1	0	0	1	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0054	4496	1	1	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0055	4496	1	0	0	0	0	1	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0056	4491	1	0	1	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0057	4491	1	0	0	1	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0058	4491	1	0	0	0	0	1	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0059	4491	1	0	0	1	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0060	4495	1	0	0	0	1	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0061	4500	1	0	0	0	0	1	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0062	4489	1	1	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0063	4496	1	0	0	1	0	0	copy fasta	LMO4	chr1	87323880	87353923