JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LMO4_chr1_87323880_87353923	0/0	t0064	4495	1	1	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0065	4490	1	0	1	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0066	4474	1	0	0	0	0	1	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0067	4495	1	1	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0068	4494	1	0	1	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0069	4491	1	1	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0070	4494	1	1	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0071	4489	1	0	0	0	0	1	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	t0072	4493	1	0	0	1	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO7_chr13_75631330_75864866	0/0	t0001	2252	122	22	29	57	3	11	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	1/1	t0002	2252	98	22	18	37	5	14	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	t0003	2253	26	5	3	11	1	6	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	t0004	2253	11	5	1	3	1	1	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	t0005	2252	3	0	2	0	0	1	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	t0006	2252	1	1	0	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	t0007	2253	1	0	1	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	t0008	2252	1	0	1	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	t0009	2252	1	1	0	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	t0010	2252	1	1	0	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	t0011	2252	1	0	1	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	t0012	2252	1	1	0	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	t0013	2252	1	0	0	1	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	t0014	2253	1	0	1	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	t0015	2253	1	0	0	0	0	1	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	t0016	2252	1	0	0	1	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	t0017	2252	1	0	1	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMOD1_chr1_201891456_201951548	0/1	t0001	2125	288	48	54	147	12	26	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	t0002	2125	66	19	16	16	4	11	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	t0003	2125	19	19	0	0	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	t0004	2125	12	0	3	0	0	9	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	t0005	2125	3	1	2	0	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	t0006	2125	2	2	0	0	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	t0007	2125	1	0	0	1	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	t0008	2125	1	0	1	0	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	t0009	2125	1	0	0	1	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	t0010	2125	1	0	0	1	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	t0011	2125	1	1	0	0	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	t0012	2125	1	0	1	0	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	t0013	2125	1	1	0	0	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	t0014	2125	1	1	0	0	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	t0015	2125	1	0	1	0	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	1/0	t0016	2125	1	0	0	0	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD2_chr7_123650866_123669290	0/0	t0001	644	188	38	27	87	9	27	copy fasta	LMOD2	chr7	123650866	123669290
LMOD2_chr7_123650866_123669290	0/1	t0002	644	120	37	18	54	4	6	copy fasta	LMOD2	chr7	123650866	123669290
LMOD2_chr7_123650866_123669290	1/0	t0003	644	84	17	20	33	3	10	copy fasta	LMOD2	chr7	123650866	123669290
LMOD2_chr7_123650866_123669290	0/0	t0004	644	1	0	1	0	0	0	copy fasta	LMOD2	chr7	123650866	123669290
LMOD2_chr7_123650866_123669290	0/0	t0005	644	1	0	0	1	0	0	copy fasta	LMOD2	chr7	123650866	123669290
LMOD2_chr7_123650866_123669290	0/0	t0006	644	1	0	0	1	0	0	copy fasta	LMOD2	chr7	123650866	123669290
LMOD2_chr7_123650866_123669290	0/0	t0007	644	1	0	0	0	0	1	copy fasta	LMOD2	chr7	123650866	123669290
LMOD3_chr3_69101065_69127595	0/0	t0001	3241	34	5	7	18	1	3	copy fasta	LMOD3	chr3	69101065	69127595