JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LMOD3_chr3_69101065_69127595	1/0	t0002	3240	30	0	12	9	3	5	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0003	3230	18	5	0	12	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0004	3237	17	0	0	17	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0005	3240	13	0	4	8	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0006	3242	11	0	4	6	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0007	3238	11	3	1	7	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0008	3237	10	2	0	7	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/1	t0009	3240	8	1	0	6	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0010	3241	7	1	1	3	2	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0011	3248	6	5	0	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0012	3246	6	0	0	6	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0013	3241	6	0	4	0	2	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0014	3229	6	4	2	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0015	3237	6	0	0	5	1	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0016	3236	6	3	0	0	0	3	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0017	3250	5	2	1	0	1	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0018	3247	5	2	0	3	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0019	3239	5	1	0	3	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0020	3239	5	0	0	4	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0021	3231	5	0	0	5	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0022	3217	4	4	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0023	3252	4	0	2	0	0	2	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0024	3241	4	0	0	4	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0025	3241	4	0	0	2	0	2	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0026	3240	4	0	4	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0027	3240	4	0	1	3	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0028	3241	4	4	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0029	3238	4	0	0	3	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0030	3238	4	0	0	4	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0031	3237	4	1	0	0	0	3	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0032	3239	4	4	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0033	3237	3	3	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0034	3242	3	0	1	2	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0035	3242	3	0	2	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0036	3242	3	1	0	2	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0037	3241	3	0	0	3	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0038	3239	3	0	0	3	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0039	3230	3	0	1	1	1	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0040	3240	3	0	0	3	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0041	3239	3	0	0	3	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0042	3238	3	0	0	3	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0043	3238	3	0	0	3	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0044	3242	2	0	2	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0045	3246	2	2	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0046	3249	2	0	1	0	1	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0047	3241	2	2	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0048	3235	2	1	1	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0049	3234	2	2	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0050	3251	2	0	0	0	0	2	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0051	3248	2	0	0	2	0	0	copy fasta	LMOD3	chr3	69101065	69127595