JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LMOD3_chr3_69101065_69127595	0/0	t0052	3246	2	2	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0053	3247	2	1	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0054	3247	2	0	1	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0055	3245	2	2	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0056	3243	2	1	0	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0057	3242	2	1	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0058	3241	2	0	0	2	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0059	3229	2	0	0	2	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0060	3235	2	2	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0061	3239	2	0	0	2	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0062	3238	2	0	0	2	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0063	3248	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0064	3229	1	0	1	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0065	3239	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0066	3238	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0067	3250	1	0	1	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0068	3241	1	0	1	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0069	3238	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0070	3237	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0071	3227	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0072	3200	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0073	3238	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0074	3237	1	0	0	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0075	3219	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0076	3247	1	0	0	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0077	3218	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0078	3255	1	0	0	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0079	3253	1	0	0	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0080	3250	1	0	0	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0081	3243	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0082	3240	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0083	3215	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0084	3242	1	0	1	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0085	3239	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0086	3237	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0087	3238	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0088	3236	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0089	3233	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0090	3247	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0091	3252	1	0	1	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0092	3252	1	0	1	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0093	3250	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0094	3253	1	0	0	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0095	3252	1	0	0	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0096	3251	1	0	0	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0097	3249	1	0	0	0	1	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0098	3249	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0099	3248	1	0	0	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0100	3247	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0101	3246	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595