Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APOA4_chr11_116815700_116828304	0/0	t0004	281	1	1	0	0	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA5_chr11_116784367_116796879	0/1	t0001	781	251	54	57	100	10	29	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	1/0	t0002	781	93	1	7	76	2	6	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	t0003	783	58	10	3	44	0	1	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	t0004	781	31	7	12	0	6	6	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	t0005	781	23	11	2	8	0	2	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	t0006	783	10	7	3	0	0	0	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	t0007	781	4	0	0	0	0	4	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	t0008	781	4	4	0	0	0	0	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	t0009	781	1	1	0	0	0	0	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	t0010	781	1	1	0	0	0	0	copy fasta	APOA5	chr11	116784367	116796879
APOBEC1_chr12_7644400_7670908	1/1	t0001	184	420	87	77	194	14	46	copy fasta	APOBEC1	chr12	7644400	7670908
APOBEC1_chr12_7644400_7670908	0/0	t0002	184	12	11	1	0	0	0	copy fasta	APOBEC1	chr12	7644400	7670908
APOBEC2_chr6_41048202_41069891	1/1	t0001	959	352	94	59	155	5	37	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	t0002	959	6	0	5	0	1	0	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	t0003	959	1	0	0	0	0	1	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	t0004	959	1	0	0	1	0	0	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC3A_chr22_38952609_38968184	1/0	t0001	759	141	48	34	31	8	19	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/1	t0002	758	81	10	17	41	5	7	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	t0003	84	40	2	8	26	1	3	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	t0004	760	39	3	17	11	0	8	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	t0005	758	19	0	3	12	0	4	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	t0006	758	11	10	1	0	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	t0007	759	6	6	0	0	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	t0008	759	6	5	1	0	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	t0009	759	4	4	0	0	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	t0010	759	4	3	1	0	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	t0011	758	2	0	0	0	2	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	t0012	758	2	2	0	0	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	t0013	758	1	1	0	0	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	t0014	759	1	0	0	0	0	1	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	t0015	759	1	1	0	0	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	t0016	759	1	0	0	1	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	t0017	84	1	1	0	0	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3B_chr22_38977347_38997779	1/1	t0001	442	347	96	68	134	15	32	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	t0002	442	5	0	4	0	1	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	t0003	442	2	0	0	2	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3C_chr22_39009257_39025352	0/0	t0001	2073	73	9	14	38	1	11	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0002	2071	66	1	14	45	1	5	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0003	2071	28	3	12	6	2	5	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0004	2072	26	1	5	18	0	2	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0005	2074	23	4	3	11	0	5	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/1	t0006	2071	22	2	7	7	3	2	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	1/0	t0007	2072	20	3	2	10	1	3	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0008	2070	19	12	1	6	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0009	2072	16	0	5	7	1	3	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0010	2073	15	2	7	5	1	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0011	2074	11	0	0	10	0	1	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0012	2075	11	0	2	7	1	1	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0013	2072	6	1	1	4	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352