JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LMOD3_chr3_69101065_69127595	0/0	t0102	3243	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0103	3243	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0104	3242	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0105	3241	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0106	3242	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0107	3243	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0108	3242	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0109	3240	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0110	3241	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0111	3241	1	0	1	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0112	3241	1	0	1	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0113	3241	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0114	3239	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0115	3242	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0116	3238	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0117	3238	1	0	0	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0118	3238	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0119	3240	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0120	3240	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0121	3239	1	0	0	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0122	3238	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0123	3237	1	0	0	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0124	3228	1	0	1	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0125	3226	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0126	3228	1	0	0	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0127	3227	1	0	1	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0128	3226	1	0	0	0	1	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0129	3239	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0130	3241	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0131	3232	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0132	3232	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0133	3231	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0134	3229	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0135	3228	1	0	1	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0136	3230	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0137	3229	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0138	3239	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0139	3240	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0140	3239	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0141	3239	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0142	3240	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0143	3237	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0144	3244	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0145	3220	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0146	3218	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0147	3233	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0148	3245	1	0	1	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0149	3239	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0150	3238	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0151	3240	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595