JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LMOD3_chr3_69101065_69127595	0/0	t0152	3238	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0153	3239	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0154	3239	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	t0155	3240	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMTK2_chr7_98101862_98214638	0/0	t0001	4461	71	6	10	39	1	15	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0002	4461	68	8	10	37	2	11	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0003	4462	51	0	7	42	0	2	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/1	t0004	4461	40	2	18	12	3	4	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0005	4461	33	23	3	4	0	3	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0006	4461	16	0	2	13	0	1	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0007	4463	7	7	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0008	4461	7	0	6	0	0	1	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0009	4461	5	5	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0010	4463	5	1	2	2	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0011	4461	4	0	0	4	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0012	4461	4	4	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0013	4464	4	0	1	3	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0014	4457	4	4	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0015	4460	4	4	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0016	4463	3	0	1	2	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0017	4457	3	3	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0018	4461	3	0	0	3	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0019	4463	2	2	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0020	4461	2	2	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0021	4460	2	0	1	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0022	4461	2	2	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	1/0	t0023	4463	2	0	1	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0024	4460	2	0	0	1	0	1	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0025	4462	2	2	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0026	4462	2	0	0	2	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0027	4465	2	2	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0028	4461	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0029	4460	1	0	1	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0030	4460	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0031	4462	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0032	4461	1	0	1	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0033	4451	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0034	4461	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0035	4461	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0036	4465	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0037	4460	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0038	4460	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0039	4461	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0040	4461	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0041	4461	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0042	4461	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0043	4461	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0044	4461	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0045	4463	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0046	4461	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638