JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LMTK2_chr7_98101862_98214638	0/0	t0047	4461	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0048	4462	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0049	4462	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0050	4462	1	0	0	0	0	1	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0051	4461	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0052	4457	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0053	4463	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0054	4460	1	0	0	0	0	1	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0055	4461	1	0	0	0	0	1	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0056	4461	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0057	4463	1	0	0	0	0	1	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0058	4461	1	0	1	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0059	4464	1	0	0	0	1	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0060	4462	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0061	4461	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0062	4461	1	0	1	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0063	4463	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0064	4461	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0065	4461	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0066	4461	1	0	0	0	1	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	t0067	4461	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK3_chr19_48480271_48516835	1/1	t0001	762	304	78	61	121	12	30	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	t0002	762	3	3	0	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	t0003	762	2	2	0	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	t0004	762	2	0	0	0	0	2	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	t0005	762	1	0	1	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	t0006	762	1	0	0	1	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	t0007	762	1	1	0	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMX1A_chr1_165196867_165361715	1/0	t0001	2397	113	22	21	44	4	21	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0002	2397	33	4	11	16	0	2	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0003	2397	18	3	0	14	0	1	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0004	2397	17	17	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/1	t0005	2397	16	2	3	4	0	6	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0006	2397	12	1	8	0	2	1	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0007	2397	9	2	0	7	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0008	2397	8	1	0	7	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0009	2397	7	0	6	0	1	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0010	2397	4	1	2	0	0	1	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0011	2397	4	4	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0012	2397	4	4	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0013	2397	4	1	2	0	1	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0014	2397	3	3	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0015	2397	3	3	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0016	2397	3	1	1	0	0	1	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0017	2397	3	1	1	1	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0018	2397	2	0	1	1	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0019	2397	2	2	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0020	2397	2	2	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0021	2397	2	0	0	2	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0022	2397	2	0	0	0	0	2	copy fasta	LMX1A	chr1	165196867	165361715