JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LMX1A_chr1_165196867_165361715	0/0	t0023	2397	1	0	1	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0024	2397	1	0	0	0	0	1	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0025	2397	1	0	1	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0026	2397	1	1	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0027	2397	1	1	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0028	2397	1	1	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0029	2397	1	1	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0030	2397	1	1	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0031	2397	1	1	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0032	2397	1	0	0	1	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0033	2397	1	1	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0034	2397	1	0	0	1	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0035	2397	1	1	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0036	2397	1	1	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0037	2397	1	0	0	1	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0038	2397	1	1	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	t0039	2386	1	0	0	1	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1B_chr9_126608928_126706032	0/0	t0001	5104	24	0	2	22	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0002	5097	17	4	5	2	2	4	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0003	5099	12	0	1	10	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0004	5109	10	0	1	9	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0005	5083	6	0	3	3	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0006	5089	6	0	2	0	2	2	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0007	5097	5	0	0	5	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0008	5102	5	0	0	3	0	2	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0009	5101	4	0	1	2	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0010	5098	4	0	0	4	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0011	5104	4	0	1	3	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0012	5107	4	4	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0013	5099	4	0	2	0	0	2	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0014	5106	3	0	0	3	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0015	5104	3	0	0	3	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0016	5104	3	0	0	3	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0017	5097	3	0	0	2	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0018	5102	3	0	2	1	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0019	5109	3	0	0	3	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0020	5114	3	0	0	3	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0021	5104	3	0	1	2	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0022	5100	3	0	0	3	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0023	5104	3	3	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0024	5102	3	0	2	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0025	5100	2	0	1	1	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0026	5107	2	0	0	2	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0027	5105	2	0	2	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0028	5099	2	0	0	0	1	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0029	5101	2	0	0	2	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0030	5099	2	0	2	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0031	5101	2	0	2	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0032	5105	2	0	0	2	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0033	5095	2	2	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032