JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LMX1B_chr9_126608928_126706032	0/0	t0034	5097	2	0	0	2	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0035	5092	2	0	0	0	0	2	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0036	5097	2	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0037	5104	2	0	0	2	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0038	5102	2	0	1	0	1	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0039	5109	2	0	0	2	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0040	5107	2	2	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0041	5088	2	0	0	2	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0042	5114	2	2	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0043	5099	2	0	0	2	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0044	5094	2	0	2	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0045	5102	2	0	2	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0046	5104	2	0	0	2	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0047	5109	2	0	0	2	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0048	5092	2	2	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0049	5104	2	0	2	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0050	5104	2	2	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/1	t0051	5099	2	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0052	5097	2	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0053	5099	2	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0054	5102	2	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0055	5092	2	2	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0056	5091	1	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0057	5094	1	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0058	5092	1	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0059	5107	1	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0060	5100	1	0	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0061	5107	1	0	0	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0062	5105	1	0	0	1	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0063	5107	1	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0064	5112	1	0	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0065	5117	1	0	0	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0066	5105	1	0	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0067	5105	1	0	0	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0068	5105	1	0	0	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0069	5117	1	0	0	0	1	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0070	5097	1	0	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0071	5100	1	0	0	1	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0072	5112	1	0	0	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0073	5107	1	0	0	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0074	5107	1	0	0	1	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0075	5107	1	0	0	1	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0076	5123	1	0	0	0	1	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0077	5091	1	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0078	5101	1	0	0	1	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0079	5101	1	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0080	5099	1	0	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0081	5099	1	0	0	0	1	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0082	5099	1	0	0	1	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0083	5099	1	0	0	1	0	0	copy fasta	LMX1B	chr9	126608928	126706032