JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
LMX1B_chr9_126608928_126706032	0/0	t0084	5101	1	0	0	1	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0085	5106	1	0	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0086	5104	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0087	5104	1	0	0	1	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0088	5091	1	0	1	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0089	5096	1	0	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0090	5099	1	0	0	1	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0091	5101	1	0	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0092	5101	1	0	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0093	5101	1	0	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0094	5106	1	0	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0095	5106	1	0	0	1	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0096	5098	1	0	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0097	5100	1	0	0	1	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0098	5105	1	0	0	1	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0099	5084	1	0	0	1	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0100	5108	1	0	0	1	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0101	5105	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0102	5100	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0103	5100	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0104	5105	1	0	1	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0105	5103	1	0	1	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0106	5093	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0107	5109	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0108	5104	1	0	0	1	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0109	5089	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0110	5089	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0111	5089	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0112	5094	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0113	5097	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0114	5104	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0115	5102	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0116	5104	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0117	5092	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0118	5097	1	0	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0119	5094	1	0	0	1	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0120	5099	1	0	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0121	5099	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0122	5099	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0123	5099	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0124	5099	1	0	1	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0125	5099	1	0	0	1	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0126	5097	1	0	1	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0127	5097	1	0	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0128	5097	1	0	1	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0129	5099	1	0	0	1	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0130	5102	1	0	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0131	5102	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0132	5104	1	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0133	5104	1	0	0	1	0	copy fasta	LMX1B	chr9	126608928	126706032