JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LMX1B_chr9_126608928_126706032	0/0	t0184	5107	1	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0185	5109	1	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0186	5112	1	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0187	5114	1	0	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0188	5099	1	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0189	5097	1	0	0	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0190	5099	1	0	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0191	5099	1	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0192	5102	1	0	1	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0193	5102	1	0	0	1	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0194	5107	1	0	0	0	0	1	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0195	5092	1	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0196	5085	1	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	t0197	5092	1	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LNP1_chr3_100396539_100461319	0/0	t0001	1328	232	60	35	120	1	16	copy fasta	LNP1	chr3	100396539	100461319
LNP1_chr3_100396539_100461319	0/1	t0002	1328	68	0	13	36	6	12	copy fasta	LNP1	chr3	100396539	100461319
LNP1_chr3_100396539_100461319	1/0	t0003	1328	67	7	22	18	5	14	copy fasta	LNP1	chr3	100396539	100461319
LNP1_chr3_100396539_100461319	0/0	t0004	1328	12	11	1	0	0	0	copy fasta	LNP1	chr3	100396539	100461319
LNP1_chr3_100396539_100461319	0/0	t0005	1328	7	7	0	0	0	0	copy fasta	LNP1	chr3	100396539	100461319
LNP1_chr3_100396539_100461319	0/0	t0006	1328	5	0	0	5	0	0	copy fasta	LNP1	chr3	100396539	100461319
LNP1_chr3_100396539_100461319	0/0	t0007	1328	1	0	1	0	0	0	copy fasta	LNP1	chr3	100396539	100461319
LNP1_chr3_100396539_100461319	0/0	t0008	1328	1	1	0	0	0	0	copy fasta	LNP1	chr3	100396539	100461319
LNP1_chr3_100396539_100461319	0/0	t0009	1328	1	1	0	0	0	0	copy fasta	LNP1	chr3	100396539	100461319
LNP1_chr3_100396539_100461319	0/0	t0010	1328	1	1	0	0	0	0	copy fasta	LNP1	chr3	100396539	100461319
LNP1_chr3_100396539_100461319	0/0	t0011	1328	1	1	0	0	0	0	copy fasta	LNP1	chr3	100396539	100461319
LNP1_chr3_100396539_100461319	0/0	t0012	1328	1	1	0	0	0	0	copy fasta	LNP1	chr3	100396539	100461319
LNP1_chr3_100396539_100461319	0/0	t0013	1328	1	0	0	1	0	0	copy fasta	LNP1	chr3	100396539	100461319
LNPEP_chr5_96931080_97042513	0/0	t0001	9051	47	11	4	22	1	9	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	1/0	t0002	9057	44	10	4	23	3	3	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0003	9051	24	1	3	20	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/1	t0004	9050	18	4	5	0	5	3	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0005	9044	14	0	2	11	0	1	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0006	9059	13	2	1	9	0	1	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0007	9046	11	10	1	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0008	9055	10	0	2	8	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0009	9053	10	2	2	4	1	1	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0010	9051	9	0	0	9	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0011	9049	9	0	0	9	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0012	9042	8	0	4	0	2	2	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0013	9052	7	0	3	3	0	1	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0014	9051	6	4	2	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0015	9051	5	4	1	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0016	9044	4	0	4	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0017	9044	4	0	0	4	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0018	9044	4	0	0	4	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0019	9044	4	0	0	4	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0020	9048	4	4	0	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0021	9057	4	0	4	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0022	9050	4	4	0	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0023	9044	3	2	1	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513