JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LNPEP_chr5_96931080_97042513	0/0	t0024	9057	3	2	1	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0025	9050	3	0	3	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0026	9052	3	3	0	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0027	9056	3	0	3	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0028	9044	2	0	0	0	0	2	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0029	9050	2	0	0	0	0	2	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0030	9041	2	0	0	0	0	2	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0031	9051	2	1	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0032	9057	2	0	0	2	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0033	9057	2	1	1	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0034	9061	2	1	1	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0035	9065	2	0	2	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0036	9050	2	1	0	0	1	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0037	9053	2	0	0	2	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0038	9055	2	0	1	0	0	1	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0039	9057	2	1	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0040	9051	2	0	0	2	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0041	9057	2	0	0	2	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0042	9050	2	1	1	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0043	9047	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0044	9042	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0045	9053	1	1	0	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0046	9057	1	1	0	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0047	9055	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0048	9057	1	0	0	0	0	1	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0049	9052	1	1	0	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0050	9053	1	1	0	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0051	9055	1	0	1	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0052	9055	1	1	0	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0053	9057	1	0	0	0	0	1	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0054	9057	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0055	9057	1	0	0	0	0	1	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0056	9057	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0057	9059	1	0	1	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0058	9059	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0059	9061	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0060	9065	1	0	1	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0061	9065	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0062	9042	1	0	1	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0063	9040	1	0	0	0	0	1	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0064	9044	1	0	0	0	0	1	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0065	9046	1	0	1	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0066	9037	1	1	0	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0067	9045	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0068	9046	1	1	0	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0069	9050	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0070	9051	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0071	9050	1	1	0	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0072	9048	1	1	0	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0073	9053	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513