JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LNPEP_chr5_96931080_97042513	0/0	t0074	9051	1	0	0	0	0	1	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0075	9052	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0076	9053	1	1	0	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0077	9053	1	1	0	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0078	9053	1	0	0	0	0	1	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0079	9055	1	1	0	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0080	9054	1	0	1	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0081	9054	1	0	1	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0082	9051	1	1	0	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0083	9053	1	0	0	0	0	1	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0084	9042	1	0	0	0	1	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0085	9044	1	0	1	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	t0086	9055	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPK_chr2_175918882_176007267	0/0	t0001	6257	50	1	8	32	4	5	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0002	6255	39	0	1	37	0	1	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0003	6256	34	2	1	31	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0004	6244	26	1	17	5	1	2	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0005	6256	19	17	1	0	1	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0006	6256	15	0	3	11	0	1	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0007	6254	10	3	2	1	1	3	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0008	6257	10	4	3	2	1	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0009	6257	8	0	4	0	0	4	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0010	6257	7	0	0	4	0	3	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0011	6257	7	7	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0012	6258	7	0	6	0	1	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0013	6258	7	7	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0014	6256	7	1	5	0	0	1	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0015	6257	6	0	0	6	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0016	6254	5	0	0	1	0	4	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0017	6255	5	0	0	0	0	5	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0018	6256	4	0	1	3	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0019	6254	4	0	2	0	1	1	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0020	6245	4	4	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0021	6257	4	4	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0022	6256	3	0	2	0	0	1	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0023	6256	3	2	1	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/1	t0024	6253	3	0	1	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0025	6256	3	3	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0026	6257	3	3	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0027	6256	2	0	0	0	0	2	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0028	6255	2	0	2	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0029	6255	2	2	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0030	6255	2	0	0	2	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0031	6246	2	2	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0032	6244	2	0	0	0	1	1	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0033	6243	2	0	1	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0034	6259	2	0	0	2	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0035	6257	2	0	0	2	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	1/0	t0036	6256	2	0	1	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0037	6245	2	0	0	2	0	0	copy fasta	LNPK	chr2	175918882	176007267