Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APOBEC3C_chr22_39009257_39025352	0/0	t0014	2070	6	4	0	1	0	1	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0015	2078	5	5	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0016	2070	5	0	0	5	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0017	2071	5	5	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0018	2075	5	1	1	2	1	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0019	2076	5	0	0	5	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0020	2073	4	0	1	2	0	1	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0021	2072	4	0	0	3	0	1	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0022	2074	3	3	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0023	2078	3	2	1	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0024	2070	3	0	1	1	0	1	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0025	2070	3	3	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0026	2070	3	1	0	2	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0027	2073	3	0	0	2	0	1	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0028	2069	3	1	0	2	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0029	2082	3	3	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0030	2078	2	2	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0031	2073	2	0	1	1	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0032	2071	2	0	0	2	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0033	2072	2	1	1	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0034	2073	2	2	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0035	2073	2	1	1	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0036	2075	2	1	0	1	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0037	2085	2	2	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0038	2073	2	2	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0039	2076	2	0	0	2	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0040	2072	2	1	0	1	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0041	2071	2	0	0	0	0	2	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0042	2071	1	0	0	0	0	1	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0043	2071	1	0	0	0	0	1	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0044	2079	1	1	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0045	2079	1	1	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0046	2072	1	0	1	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0047	2074	1	0	0	1	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0048	2077	1	1	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0049	2073	1	1	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0050	2075	1	1	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0051	2076	1	1	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0052	2073	1	0	1	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0053	2075	1	1	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0054	2077	1	1	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0055	2072	1	0	0	0	1	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0056	2071	1	1	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0057	2070	1	1	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0058	2071	1	1	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0059	2069	1	1	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0060	2070	1	1	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0061	2074	1	0	0	1	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0062	2073	1	0	0	1	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	t0063	2070	1	1	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352