JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LNPK_chr2_175918882_176007267	0/0	t0038	6254	1	0	0	0	0	1	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0039	6255	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0040	6255	1	0	1	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0041	6256	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0042	6255	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0043	6255	1	0	0	0	0	1	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0044	6255	1	1	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0045	6255	1	0	1	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0046	6257	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0047	6254	1	1	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0048	6255	1	0	0	0	0	1	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0049	6256	1	1	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0050	6256	1	1	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0051	6257	1	1	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0052	6253	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0053	6256	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0054	6256	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0055	6256	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0056	6257	1	1	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0057	6257	1	0	1	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0058	6256	1	1	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0059	6256	1	0	1	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0060	6256	1	0	1	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0061	6256	1	0	0	0	1	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0062	6257	1	1	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0063	6256	1	0	0	0	1	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0064	6257	1	1	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0065	6256	1	1	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0066	6256	1	1	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0067	6255	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0068	6243	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0069	6258	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0070	6256	1	1	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0071	6256	1	0	1	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0072	6257	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0073	6255	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0074	6244	1	0	1	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0075	6245	1	1	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0076	6244	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0077	6256	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0078	6257	1	0	0	0	0	1	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0079	6256	1	1	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0080	6257	1	1	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0081	6258	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0082	6258	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0083	6257	1	0	0	0	1	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0084	6257	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0085	6257	1	0	0	0	0	1	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0086	6257	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0087	6255	1	0	1	0	0	0	copy fasta	LNPK	chr2	175918882	176007267