JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LNPK_chr2_175918882_176007267	0/0	t0088	6256	1	0	1	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0089	6257	1	0	0	0	0	1	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	t0090	6257	1	0	1	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNX1_chr4_53454301_53596486	0/0	t0001	1788	94	8	26	50	3	7	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	t0002	1792	67	28	2	27	0	10	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	1/1	t0003	1792	61	7	10	32	1	9	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	t0004	1791	49	10	12	20	4	3	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	t0005	1788	40	7	5	20	2	6	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	t0006	1788	17	16	1	0	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	t0007	1790	5	0	3	0	2	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	t0008	1795	3	0	0	1	0	2	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	t0009	1788	3	3	0	0	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	t0010	1788	3	3	0	0	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	t0011	1793	2	0	0	2	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	t0012	1788	2	2	0	0	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	t0013	1788	2	0	1	0	0	1	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	t0014	1792	1	0	0	1	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	t0015	1789	1	0	0	1	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	t0016	1792	1	1	0	0	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	t0017	1792	1	1	0	0	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	t0018	1788	1	1	0	0	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	t0019	1788	1	1	0	0	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	t0020	1788	1	1	0	0	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	t0021	1788	1	1	0	0	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX2_chr13_27540913_27625529	1/0	t0001	2678	93	1	19	57	4	11	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0002	2678	85	39	14	18	4	10	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0003	2678	51	9	1	35	1	5	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0004	2678	31	3	3	16	3	6	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0005	2671	21	4	2	12	1	2	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0006	2678	14	1	10	0	2	1	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0007	2669	9	7	2	0	0	0	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0008	2671	5	4	1	0	0	0	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0009	2678	4	4	0	0	0	0	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0010	2678	4	0	3	0	0	1	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0011	2681	4	0	1	0	1	2	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0012	2671	3	1	2	0	0	0	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0013	2678	3	0	2	0	0	1	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0014	2678	3	0	0	3	0	0	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0015	2671	2	2	0	0	0	0	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0016	2678	2	0	0	2	0	0	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/1	t0017	2678	2	0	1	0	0	0	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0018	2678	2	0	1	0	0	1	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0019	2678	2	0	0	0	0	2	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0020	2681	2	0	0	1	0	1	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0021	2678	2	0	0	2	0	0	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0022	2663	1	0	1	0	0	0	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0023	2671	1	1	0	0	0	0	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0024	2671	1	0	0	1	0	0	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0025	2678	1	0	0	1	0	0	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	t0026	2678	1	0	0	1	0	0	copy fasta	LNX2	chr13	27540913	27625529