JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LOC400499_chr16_11367015_11532247	0/0	t0002	792	68	26	15	14	6	7	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/1	t0003	792	66	7	19	29	2	8	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	t0004	792	46	17	11	9	5	4	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	t0005	792	19	8	10	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	t0006	792	12	12	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	t0007	792	6	6	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	t0008	792	4	4	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	t0009	792	3	0	0	3	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	t0010	792	3	3	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	t0011	792	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	t0012	792	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	t0013	792	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	t0014	792	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	t0015	792	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC647264_chr13_63827361_63838053	1/0	t0001	364	385	68	72	185	15	44	copy fasta	LOC647264	chr13	63827361	63838053
LOC647264_chr13_63827361_63838053	0/1	t0002	364	24	0	7	9	3	4	copy fasta	LOC647264	chr13	63827361	63838053
LOC647264_chr13_63827361_63838053	0/0	t0003	363	13	10	3	0	0	0	copy fasta	LOC647264	chr13	63827361	63838053
LOC647264_chr13_63827361_63838053	0/0	t0004	364	10	10	0	0	0	0	copy fasta	LOC647264	chr13	63827361	63838053
LOC647264_chr13_63827361_63838053	0/0	t0005	364	6	6	0	0	0	0	copy fasta	LOC647264	chr13	63827361	63838053
LOC647264_chr13_63827361_63838053	0/0	t0006	363	2	2	0	0	0	0	copy fasta	LOC647264	chr13	63827361	63838053
LOC647264_chr13_63827361_63838053	0/0	t0007	364	1	0	0	1	0	0	copy fasta	LOC647264	chr13	63827361	63838053
LOC647264_chr13_63827361_63838053	0/0	t0008	364	1	0	0	1	0	0	copy fasta	LOC647264	chr13	63827361	63838053
LOC728392_chr17_5494427_5506006	0/0	t0001	1141	153	16	21	101	4	11	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/1	t0002	1140	74	41	9	12	5	6	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	1/0	t0003	1141	74	8	38	8	4	15	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/0	t0004	1139	42	9	0	29	0	4	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/0	t0005	1141	38	17	3	14	2	2	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/0	t0006	1140	35	1	2	29	0	3	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/0	t0007	1140	3	0	0	3	0	0	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/0	t0008	1140	2	2	0	0	0	0	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/0	t0009	1139	2	0	0	2	0	0	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/0	t0010	1141	2	0	0	2	0	0	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/0	t0011	1139	2	1	1	0	0	0	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/0	t0012	1139	1	1	0	0	0	0	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/0	t0013	1141	1	0	0	0	1	0	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/0	t0014	1141	1	0	0	0	0	1	copy fasta	LOC728392	chr17	5494427	5506006
LOC728743_chr7_150400676_150417470	0/0	t0001	2833	123	13	26	64	4	16	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/1	t0002	2834	123	2	16	88	5	11	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0003	2834	105	21	28	34	4	18	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0004	2834	17	15	2	0	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	1/0	t0005	2834	14	12	1	0	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0006	2834	6	6	0	0	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0007	2834	6	6	0	0	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0008	2834	5	5	0	0	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0009	2833	3	3	0	0	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0010	2833	3	0	1	2	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0011	2833	2	0	0	2	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0012	2833	2	2	0	0	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0013	2834	1	0	0	0	0	1	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0014	2834	1	1	0	0	0	0	copy fasta	LOC728743	chr7	150400676	150417470