JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LOC728743_chr7_150400676_150417470	0/0	t0015	2834	1	1	0	0	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0016	2833	1	0	0	0	0	1	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0017	2833	1	0	0	1	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0018	2833	1	0	0	1	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0019	2833	1	1	0	0	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0020	2834	1	0	0	0	0	1	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0021	2834	1	0	0	1	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0022	2834	1	0	0	1	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0023	2834	1	0	1	0	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0024	2834	1	0	0	0	0	1	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0025	2834	1	0	1	0	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0026	2834	1	1	0	0	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0027	2834	1	1	0	0	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0028	2834	1	1	0	0	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0029	2834	1	1	0	0	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0030	2834	1	0	0	1	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0031	2834	1	0	0	1	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0032	2834	1	1	0	0	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0033	2833	1	1	0	0	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0034	2834	1	0	0	0	0	1	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	t0035	2849	1	0	0	0	1	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC729966_chr19_18245034_18260362	1/1	t0001	152	424	71	78	212	15	46	copy fasta	LOC729966	chr19	18245034	18260362
LOC729966_chr19_18245034_18260362	0/0	t0002	164	27	23	2	0	0	2	copy fasta	LOC729966	chr19	18245034	18260362
LOC729966_chr19_18245034_18260362	0/0	t0003	152	3	2	0	0	1	0	copy fasta	LOC729966	chr19	18245034	18260362
LOC730098_chr9_34659163_34671045	0/1	t0001	1258	268	65	57	106	11	28	copy fasta	LOC730098	chr9	34659163	34671045
LOC730098_chr9_34659163_34671045	1/0	t0002	1258	95	21	20	37	2	14	copy fasta	LOC730098	chr9	34659163	34671045
LOC730098_chr9_34659163_34671045	0/0	t0003	1258	7	5	2	0	0	0	copy fasta	LOC730098	chr9	34659163	34671045
LOC730098_chr9_34659163_34671045	0/0	t0004	1258	2	1	0	0	0	1	copy fasta	LOC730098	chr9	34659163	34671045
LOC730098_chr9_34659163_34671045	0/0	t0005	1258	1	0	0	1	0	0	copy fasta	LOC730098	chr9	34659163	34671045
LOC730098_chr9_34659163_34671045	0/0	t0006	1258	1	0	1	0	0	0	copy fasta	LOC730098	chr9	34659163	34671045
LOC730098_chr9_34659163_34671045	0/0	t0007	1258	1	0	0	0	1	0	copy fasta	LOC730098	chr9	34659163	34671045
LOC730098_chr9_34659163_34671045	0/0	t0008	1258	1	0	0	0	0	1	copy fasta	LOC730098	chr9	34659163	34671045
LOC730098_chr9_34659163_34671045	0/0	t0009	1258	1	0	0	1	0	0	copy fasta	LOC730098	chr9	34659163	34671045
LOC730098_chr9_34659163_34671045	0/0	t0010	1258	1	0	0	1	0	0	copy fasta	LOC730098	chr9	34659163	34671045
LOC93622_chr4_6669075_6681047	1/0	t0001	1614	180	22	30	108	9	10	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0002	1614	88	25	14	38	0	11	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/1	t0003	1610	71	1	25	19	8	17	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0004	1614	54	10	7	32	0	5	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0005	1610	9	0	0	8	0	1	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0006	1614	7	6	1	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0007	1614	7	7	0	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0008	1614	7	0	0	7	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0009	1614	4	3	1	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0010	1614	3	0	2	0	0	1	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0011	1614	3	3	0	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0012	1614	3	3	0	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0013	1614	3	3	0	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0014	1614	2	2	0	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0015	1614	2	2	0	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0016	1614	2	0	0	0	1	1	copy fasta	LOC93622	chr4	6669075	6681047