JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LOC93622_chr4_6669075_6681047	0/0	t0017	1614	2	0	2	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0018	1614	2	2	0	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0019	1614	1	1	0	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0020	1614	1	1	0	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0021	1614	1	1	0	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0022	1614	1	0	0	1	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0023	1614	1	0	0	1	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0024	1614	1	0	0	1	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0025	1614	1	1	0	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0026	1614	1	0	0	1	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0027	1614	1	1	0	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0028	1614	1	1	0	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0029	1614	1	1	0	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0030	1614	1	0	0	1	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	t0031	1614	1	0	0	1	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LONP1_chr19_5686834_5725146	1/1	t0001	213	331	83	60	140	9	37	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	t0002	242	52	3	16	15	7	11	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	t0003	213	1	0	0	1	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	t0004	242	1	0	1	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	t0005	213	1	0	1	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP2_chr16_48239300_48362349	0/0	t0001	5636	17	5	8	4	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0002	5637	15	10	2	0	0	3	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0003	5636	6	0	2	0	2	2	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0004	5640	4	1	2	0	0	1	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0005	5642	4	1	2	0	0	1	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0006	5643	3	2	1	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0007	5642	3	0	1	0	1	1	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0008	5638	3	1	0	2	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0009	5636	3	3	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0010	5637	3	2	0	1	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0011	5638	3	0	0	2	0	1	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0012	5636	3	0	0	3	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0013	5642	2	2	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0014	5643	2	2	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0015	5641	2	0	2	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0016	5641	2	0	1	0	1	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0017	5637	2	0	1	1	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0018	5641	2	2	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0019	5636	2	2	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0020	5641	2	0	1	0	0	1	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0021	5638	1	0	1	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0022	5640	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0023	5639	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0024	5638	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0025	5637	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0026	5638	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0027	5642	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0028	5641	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0029	5637	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0030	5651	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349