JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LONP2_chr16_48239300_48362349	0/0	t0031	5643	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0032	5627	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0033	5631	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0034	5630	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0035	5629	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0036	5642	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0037	5629	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0038	5650	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0039	5642	1	0	1	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0040	5639	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0041	5659	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0042	5651	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0043	5634	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0044	5650	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0045	5648	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0046	5649	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0047	5659	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0048	5649	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0049	5637	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0050	5635	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0051	5645	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0052	5642	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0053	5645	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0054	5643	1	0	1	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0055	5644	1	0	0	1	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0056	5642	1	0	1	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0057	5642	1	0	0	1	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0058	5642	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0059	5643	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0060	5641	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0061	5641	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0062	5644	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0063	5638	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0064	5642	1	0	0	0	0	1	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0065	5637	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	1/0	t0066	5637	1	0	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0067	5635	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0068	5637	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0069	5638	1	0	0	0	1	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0070	5640	1	0	0	0	0	1	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0071	5637	1	0	0	0	0	1	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0072	5636	1	0	1	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0073	5637	1	0	1	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0074	5638	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0075	5639	1	0	0	0	0	1	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0076	5639	1	0	1	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0077	5634	1	0	1	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0078	5635	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/1	t0079	5636	1	0	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0080	5636	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349