JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LONP2_chr16_48239300_48362349	0/0	t0081	5635	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0082	5635	1	0	0	1	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0083	5636	1	0	0	0	0	1	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0084	5637	1	0	1	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0085	5638	1	0	0	1	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0086	5638	1	0	0	0	0	1	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0087	5638	1	0	1	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0088	5636	1	0	0	1	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0089	5636	1	0	1	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0090	5635	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	t0091	5641	1	0	0	0	1	0	copy fasta	LONP2	chr16	48239300	48362349
LONRF1_chr8_12716906_12760526	0/0	t0001	1297	324	60	60	158	10	36	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/1	t0002	1299	13	1	6	0	2	3	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	t0003	1297	12	0	0	12	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	t0004	1297	11	11	0	0	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	t0005	1296	10	0	1	9	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	t0006	1297	9	9	0	0	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	t0007	1297	6	6	0	0	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	t0008	1297	6	0	1	5	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	1/0	t0009	1297	4	3	0	0	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	t0010	1297	2	2	0	0	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	t0011	1297	1	0	0	0	0	1	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	t0012	1297	1	1	0	0	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	t0013	1297	1	0	0	1	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	t0014	1297	1	0	0	1	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	t0015	1297	1	1	0	0	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	t0016	1297	1	0	0	0	0	1	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	t0017	1297	1	0	0	0	0	1	copy fasta	LONRF1	chr8	12716906	12760526
LONRF2_chr2_100266875_100327501	0/0	t0001	12780	35	5	9	13	1	7	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0002	12782	32	0	0	32	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0003	12780	31	0	0	31	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/1	t0004	12782	30	0	6	17	2	4	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0005	12780	14	0	9	5	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0006	12782	10	10	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0007	12782	9	0	9	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0008	12834	6	0	5	0	1	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	1/0	t0009	12832	6	2	2	1	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0010	12834	6	0	2	1	0	3	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0011	12834	6	0	0	6	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0012	12786	6	5	1	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0013	12782	6	0	0	6	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0014	12780	6	0	0	5	0	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0015	12832	5	0	5	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0016	12786	5	0	0	0	0	5	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0017	12786	4	0	0	0	0	4	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0018	12788	4	4	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0019	12782	4	4	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0020	12782	4	0	1	0	2	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0021	12782	3	0	2	0	0	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0022	12782	3	1	0	2	0	0	copy fasta	LONRF2	chr2	100266875	100327501