JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LONRF2_chr2_100266875_100327501	0/0	t0023	12780	3	0	0	2	0	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0024	12786	3	3	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0025	12782	3	0	0	3	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0026	12780	3	0	0	1	0	2	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0027	12782	3	0	1	0	0	2	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0028	12782	3	1	2	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0029	12834	2	0	0	0	1	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0030	12780	2	0	1	0	0	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0031	12781	2	2	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0032	12784	2	2	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0033	12784	2	1	0	0	1	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0034	12784	2	2	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0035	12783	2	2	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0036	12782	2	2	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0037	12782	2	2	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0038	12781	2	0	0	2	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0039	12783	2	2	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0040	12782	2	2	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0041	12782	2	2	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0042	12784	1	1	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0043	12784	1	1	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0044	12834	1	0	0	0	0	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0045	12833	1	0	1	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0046	12832	1	1	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0047	12832	1	0	0	1	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0048	12834	1	0	0	0	0	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0049	12832	1	0	1	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0050	12834	1	0	0	1	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0051	12834	1	0	0	0	1	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0052	12834	1	0	0	0	0	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0053	12834	1	0	0	0	1	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0054	12831	1	0	1	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0055	12785	1	1	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0056	12785	1	1	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0057	12785	1	0	1	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0058	12782	1	1	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0059	12782	1	1	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0060	12784	1	1	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0061	12780	1	0	1	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0062	12781	1	0	0	1	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0063	12780	1	0	0	0	0	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0064	12780	1	1	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0065	12782	1	1	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0066	12780	1	0	0	0	0	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0067	12780	1	0	0	0	0	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0068	12780	1	0	0	1	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0069	12780	1	0	0	0	1	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0070	12780	1	1	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0071	12782	1	1	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0072	12780	1	0	0	1	0	0	copy fasta	LONRF2	chr2	100266875	100327501