JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LONRF2_chr2_100266875_100327501	0/0	t0123	12782	1	0	0	0	0	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0124	12782	1	1	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0125	12782	1	1	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0126	12782	1	0	1	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0127	12782	1	0	0	1	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0128	12782	1	0	0	1	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0129	12782	1	0	0	1	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	t0130	12782	1	0	1	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF3_chrX_118969618_119023355	1/1	t0001	829	234	65	44	84	10	29	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	t0002	828	64	0	6	54	1	3	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	t0003	829	4	4	0	0	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	t0004	829	2	2	0	0	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	t0005	828	1	1	0	0	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	t0006	829	1	1	0	0	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	t0007	825	1	0	0	1	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	t0008	829	1	1	0	0	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	t0009	829	1	0	0	1	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LORICRIN_chr1_153254687_153267124	1/1	t0001	307	403	82	65	190	14	50	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	t0002	309	8	8	0	0	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	t0003	307	5	0	3	0	2	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	t0004	307	3	3	0	0	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	t0005	307	1	0	0	1	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	t0006	307	1	1	0	0	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	t0007	302	1	0	0	1	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LOXHD1_chr18_46472273_46662220	1/1	t0001	387	236	56	40	93	11	34	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	t0002	387	34	14	6	5	3	6	copy fasta	LOXHD1	chr18	46472273	46662220
LOXL1_chr15_73921462_73957136	0/1	t0001	622	146	23	30	68	6	18	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	t0002	622	131	22	35	54	8	12	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	t0003	622	97	26	4	54	0	13	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	1/0	t0004	622	49	22	5	14	0	7	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	t0005	622	9	0	2	7	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	t0006	622	4	3	1	0	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	t0007	622	3	0	1	2	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	t0008	622	2	2	0	0	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	t0009	622	2	0	2	0	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	t0010	622	1	0	1	0	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	t0011	622	1	1	0	0	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	t0012	622	1	0	1	0	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	t0013	622	1	1	0	0	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	t0014	622	1	0	0	1	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL2_chr8_23291897_23409120	1/1	t0001	1397	101	43	20	18	4	14	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	t0002	1397	98	21	18	48	4	7	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	t0003	1397	71	8	3	51	0	9	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	t0004	1397	31	2	18	6	1	4	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	t0005	1397	22	4	8	8	0	2	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	t0006	1397	5	5	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	t0007	1397	3	3	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	t0008	1397	2	0	0	0	0	2	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	t0009	1397	2	1	1	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	t0010	1397	2	0	2	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120