JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LOXL2_chr8_23291897_23409120	0/0	t0011	1397	1	0	0	0	0	1	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	t0012	1397	1	1	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	t0013	1397	1	0	1	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	t0014	1397	1	0	0	0	1	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	t0015	1397	1	1	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	t0016	1397	1	0	0	1	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	t0017	1397	1	0	0	0	0	1	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	t0018	1397	1	1	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	t0019	1397	1	1	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	t0020	1397	1	1	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	t0021	1397	1	0	1	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL3_chr2_74527258_74558942	1/1	t0001	1428	298	69	56	147	4	20	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	t0002	1428	9	9	0	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	t0003	1428	9	7	2	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	t0004	1428	8	8	0	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	t0005	1428	2	0	2	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	t0006	1428	2	0	0	0	0	2	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	t0007	1428	1	1	0	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	t0008	1428	1	1	0	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	t0009	1428	1	1	0	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	t0010	1428	1	0	0	1	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL4_chr10_98242690_98273194	1/0	t0001	1327	247	59	46	102	13	26	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/1	t0002	1327	158	16	19	103	5	14	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	t0003	1327	14	13	1	0	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	t0004	1327	6	0	4	0	0	2	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	t0005	1327	2	0	0	0	0	2	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	t0006	1327	2	2	0	0	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	t0007	1327	2	0	0	1	0	1	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	t0008	1327	2	0	1	0	0	1	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	t0009	1327	1	1	0	0	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	t0010	1327	1	0	0	1	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	t0011	1327	1	0	1	0	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	t0012	1327	1	0	0	1	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	t0013	1327	1	1	0	0	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOX_chr5_122058195_122083259	1/1	t0001	3823	218	51	43	89	10	23	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0002	3823	30	4	12	9	1	4	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0003	3822	16	0	1	15	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0004	3823	9	8	1	0	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0005	3823	9	7	2	0	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0006	3823	4	4	0	0	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0007	3823	4	4	0	0	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0008	3823	4	4	0	0	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0009	3823	4	4	0	0	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0010	3822	3	3	0	0	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0011	3823	3	1	1	0	1	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0012	3823	2	0	0	0	0	2	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0013	3823	2	0	0	2	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0014	3823	2	2	0	0	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0015	3823	2	0	0	2	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0016	3823	1	1	0	0	0	0	copy fasta	LOX	chr5	122058195	122083259