JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LOX_chr5_122058195_122083259	0/0	t0017	3823	1	0	0	1	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0018	3822	1	0	0	0	0	1	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0019	3823	1	1	0	0	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0020	3823	1	0	1	0	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0021	3823	1	1	0	0	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0022	3823	1	1	0	0	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0023	3823	1	1	0	0	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0024	3823	1	0	0	0	0	1	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0025	3823	1	0	0	0	0	1	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0026	3823	1	1	0	0	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	t0027	3823	1	0	1	0	0	0	copy fasta	LOX	chr5	122058195	122083259
LPAR1_chr9_110868263_111043470	1/0	t0001	2724	108	24	22	44	7	10	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0002	2724	56	6	8	32	1	9	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0003	2724	33	1	11	15	0	6	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/1	t0004	2724	18	11	4	0	0	2	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0005	2724	15	4	6	0	1	4	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0006	2724	14	13	1	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0007	2724	10	0	0	10	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0008	2724	7	5	2	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0009	2720	5	5	0	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0010	2724	4	4	0	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0011	2724	4	2	2	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0012	2720	4	4	0	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0013	2724	3	0	0	1	0	2	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0014	2724	3	0	0	0	3	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0015	2724	2	2	0	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0016	2724	2	2	0	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0017	2724	1	1	0	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0018	2724	1	0	0	0	0	1	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0019	2724	1	0	0	1	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0020	2724	1	0	0	1	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0021	2724	1	0	1	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0022	2724	1	1	0	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0023	2724	1	0	1	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0024	2724	1	1	0	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0025	2724	1	1	0	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0026	2724	1	1	0	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0027	2724	1	0	0	1	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0028	2724	1	0	0	1	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0029	2724	1	1	0	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	t0030	2724	1	1	0	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR2_chr19_19618655_19633220	1/1	t0001	740	267	53	51	116	10	35	copy fasta	LPAR2	chr19	19618655	19633220
LPAR2_chr19_19618655_19633220	0/0	t0002	740	128	35	22	56	6	9	copy fasta	LPAR2	chr19	19618655	19633220
LPAR2_chr19_19618655_19633220	0/0	t0003	740	11	0	7	4	0	0	copy fasta	LPAR2	chr19	19618655	19633220
LPAR2_chr19_19618655_19633220	0/0	t0004	740	4	4	0	0	0	0	copy fasta	LPAR2	chr19	19618655	19633220
LPAR2_chr19_19618655_19633220	0/0	t0005	740	2	0	0	0	0	2	copy fasta	LPAR2	chr19	19618655	19633220
LPAR2_chr19_19618655_19633220	0/0	t0006	740	2	0	2	0	0	0	copy fasta	LPAR2	chr19	19618655	19633220
LPAR2_chr19_19618655_19633220	0/0	t0007	740	2	0	0	2	0	0	copy fasta	LPAR2	chr19	19618655	19633220
LPAR2_chr19_19618655_19633220	0/0	t0008	740	1	1	0	0	0	0	copy fasta	LPAR2	chr19	19618655	19633220
LPAR2_chr19_19618655_19633220	0/0	t0009	740	1	1	0	0	0	0	copy fasta	LPAR2	chr19	19618655	19633220