JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LPAR3_chr1_84806602_84898206	0/0	t0051	2451	2	0	0	0	0	2	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0052	2466	2	1	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0053	2466	2	0	2	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0054	2459	2	2	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0055	2471	2	0	1	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0056	2469	2	0	0	2	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0057	2473	2	0	0	2	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0058	2469	2	0	2	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0059	2461	2	0	0	2	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0060	2460	2	0	0	2	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0061	2461	2	2	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0062	2453	1	0	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0063	2464	1	0	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0064	2462	1	0	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0065	2462	1	0	0	0	0	1	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0066	2456	1	0	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0067	2458	1	0	0	0	0	1	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0068	2457	1	0	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0069	2456	1	0	1	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0070	2466	1	0	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0071	2469	1	0	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0072	2458	1	1	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0073	2456	1	0	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0074	2454	1	0	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0075	2451	1	0	1	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0076	2462	1	1	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0077	2458	1	1	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0078	2456	1	1	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0079	2466	1	1	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0080	2465	1	0	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0081	2463	1	1	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0082	2463	1	1	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0083	2462	1	1	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0084	2459	1	0	1	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0085	2443	1	0	0	0	0	1	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0086	2469	1	0	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0087	2479	1	0	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0088	2475	1	0	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0089	2469	1	0	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0090	2473	1	0	0	0	0	1	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0091	2472	1	0	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0092	2475	1	1	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0093	2467	1	0	1	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0094	2467	1	1	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0095	2464	1	1	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0096	2465	1	0	1	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0097	2460	1	0	1	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0098	2447	1	0	0	0	0	1	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0099	2460	1	0	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0100	2460	1	0	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206