JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
LPAR3_chr1_84806602_84898206	0/0	t0101	2458	1	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0102	2460	1	0	0	0	1	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0103	2454	1	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0104	2462	1	0	0	0	1	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0105	2460	1	0	0	0	1	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0106	2456	1	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0107	2467	1	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0108	2470	1	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0109	2467	1	0	0	0	1	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0110	2468	1	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0111	2466	1	0	0	0	1	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0112	2468	1	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0113	2473	1	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0114	2464	1	1	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0115	2462	1	1	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0116	2460	1	1	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0117	2460	1	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0118	2456	1	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0119	2475	1	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0120	2468	1	1	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0121	2467	1	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0122	2467	1	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0123	2465	1	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0124	2464	1	1	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0125	2460	1	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0126	2459	1	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0127	2455	1	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0128	2473	1	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0129	2473	1	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0130	2473	1	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0131	2471	1	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0132	2471	1	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0133	2468	1	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0134	2475	1	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0135	2474	1	0	0	0	1	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0136	2471	1	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0137	2469	1	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0138	2471	1	0	0	0	1	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0139	2469	1	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0140	2463	1	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0141	2457	1	1	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0142	2464	1	1	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0143	2467	1	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0144	2462	1	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0145	2461	1	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0146	2460	1	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0147	2460	1	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0148	2458	1	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0149	2456	1	0	0	0	1	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0150	2455	1	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206