JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LPAR3_chr1_84806602_84898206	0/0	t0151	2455	1	0	1	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0152	2454	1	0	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0153	2453	1	1	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0154	2469	1	1	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0155	2467	1	0	1	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0156	2466	1	1	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0157	2465	1	0	1	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	t0158	2460	1	0	1	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR4_chrX_78742720_78763714	0/0	t0001	3330	84	1	12	59	0	12	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0002	3342	73	19	8	37	4	5	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/1	t0003	3343	32	8	8	13	0	2	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0004	3341	25	0	6	12	3	4	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	1/0	t0005	3342	20	5	10	0	1	3	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0006	3341	12	10	2	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0007	3342	11	3	2	1	2	3	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0008	3341	7	1	2	4	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0009	3343	5	2	2	0	0	1	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0010	3342	5	0	0	3	1	1	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0011	3340	5	4	1	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0012	3344	4	1	1	2	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0013	3344	3	3	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0014	3348	3	3	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0015	3345	2	2	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0016	3343	2	0	1	0	1	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0017	3340	2	0	2	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0018	3331	2	0	0	2	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0019	3340	1	0	0	1	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0020	3355	1	1	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0021	3350	1	1	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0022	3346	1	0	0	0	0	1	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0023	3345	1	1	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0024	3344	1	1	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0025	3343	1	0	1	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0026	3342	1	1	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0027	3314	1	1	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0028	3342	1	1	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0029	3342	1	1	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0030	3337	1	0	0	1	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0031	3341	1	1	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0032	3342	1	0	0	1	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0033	3342	1	1	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0034	3342	1	0	0	1	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0035	3342	1	1	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0036	3349	1	1	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0037	3341	1	1	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0038	3341	1	0	0	0	1	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0039	3341	1	1	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0040	3330	1	0	1	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0041	3331	1	0	0	1	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0042	3363	1	0	1	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714