JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LPAR4_chrX_78742720_78763714	0/0	t0043	3330	1	0	0	1	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0044	3330	1	0	1	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	t0045	3329	1	0	0	1	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR5_chr12_6613835_6640959	0/1	t0001	1560	250	35	60	110	11	33	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	1/0	t0002	1565	87	19	13	48	0	6	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	t0003	1565	26	11	4	1	3	7	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	t0004	1570	14	0	0	14	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	t0005	1565	7	7	0	0	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	t0006	1563	7	6	0	1	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	t0007	1563	5	5	0	0	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	t0008	1560	2	0	0	2	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	t0009	1565	2	2	0	0	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	t0010	1565	1	1	0	0	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	t0011	1560	1	0	1	0	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	t0012	1560	1	1	0	0	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	t0013	1560	1	1	0	0	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	t0014	1560	1	1	0	0	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	t0015	1563	1	1	0	0	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR6_chr13_48406138_48418113	1/0	t0001	942	347	79	55	171	14	27	copy fasta	LPAR6	chr13	48406138	48418113
LPAR6_chr13_48406138_48418113	0/1	t0002	942	38	5	14	16	1	1	copy fasta	LPAR6	chr13	48406138	48418113
LPAR6_chr13_48406138_48418113	0/0	t0003	942	8	0	4	0	3	1	copy fasta	LPAR6	chr13	48406138	48418113
LPAR6_chr13_48406138_48418113	0/0	t0004	942	4	4	0	0	0	0	copy fasta	LPAR6	chr13	48406138	48418113
LPAR6_chr13_48406138_48418113	0/0	t0005	942	3	3	0	0	0	0	copy fasta	LPAR6	chr13	48406138	48418113
LPAR6_chr13_48406138_48418113	0/0	t0006	942	2	1	1	0	0	0	copy fasta	LPAR6	chr13	48406138	48418113
LPAR6_chr13_48406138_48418113	0/0	t0007	942	1	0	0	0	0	1	copy fasta	LPAR6	chr13	48406138	48418113
LPAR6_chr13_48406138_48418113	0/0	t0008	942	1	0	0	1	0	0	copy fasta	LPAR6	chr13	48406138	48418113
LPA_chr6_160526482_160669275	0/0	t0001	309	80	28	15	12	8	17	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/1	t0002	309	45	24	4	13	0	3	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	1/0	t0003	309	20	0	3	8	2	6	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	t0004	309	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	t0005	309	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	t0006	309	1	0	0	1	0	0	copy fasta	LPA	chr6	160526482	160669275
LPCAT1_chr5_1456427_1528960	0/0	t0001	2341	90	26	8	45	3	8	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0002	2341	81	14	16	39	6	6	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0003	2341	42	8	15	11	1	7	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/1	t0004	2341	39	11	14	1	2	10	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	1/0	t0005	2341	33	6	5	21	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0006	2341	31	0	4	25	0	2	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0007	2341	11	10	1	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0008	2340	9	0	3	0	2	4	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0009	2342	7	7	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0010	2341	5	0	0	5	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0011	2341	4	0	0	4	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0012	2340	3	3	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0013	2341	3	0	0	2	0	1	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0014	2341	2	0	0	0	0	2	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0015	2340	2	1	1	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0016	2341	2	0	0	2	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0017	2327	1	1	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0018	2341	1	0	0	1	0	0	copy fasta	LPCAT1	chr5	1456427	1528960