JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LPCAT1_chr5_1456427_1528960	0/0	t0019	2341	1	0	0	0	1	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0020	2341	1	0	0	1	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0021	2340	1	1	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0022	2340	1	0	1	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0023	2340	1	1	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0024	2341	1	1	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0025	2341	1	0	0	1	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0026	2341	1	0	1	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0027	2341	1	1	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0028	2341	1	0	1	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0029	2341	1	0	0	0	1	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0030	2341	1	1	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0031	2341	1	0	1	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0032	2341	1	0	0	1	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0033	2341	1	0	0	1	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0034	2340	1	1	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0035	2340	1	1	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0036	2340	1	0	1	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0037	2341	1	0	0	1	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	t0038	2341	1	0	0	1	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT2_chr16_55504072_55591666	0/1	t0001	3679	44	1	20	13	3	6	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0002	3675	22	3	5	8	3	3	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0003	3675	19	7	4	4	2	2	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0004	3679	18	1	3	11	1	2	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0005	3741	18	0	4	13	0	1	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0006	3675	15	2	1	7	1	4	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0007	3741	12	1	3	6	0	2	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0008	3671	11	4	1	3	0	3	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0009	3679	9	2	2	2	0	3	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0010	3679	9	4	1	3	0	1	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0011	3679	9	3	0	6	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0012	3675	7	0	1	6	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	1/0	t0013	3679	6	1	0	3	0	1	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0014	3678	6	6	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0015	3679	5	1	0	4	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0016	3671	5	5	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0017	3741	4	0	0	4	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0018	3741	4	4	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0019	3679	4	1	1	1	0	1	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0020	3679	4	1	1	2	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0021	3741	4	3	1	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0022	3679	4	0	0	3	0	1	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0023	3682	3	3	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0024	3741	3	1	0	0	2	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0025	3675	3	0	2	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0026	3679	2	0	2	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0027	3737	2	2	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0028	3678	2	2	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0029	3675	2	0	0	2	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0030	3679	2	2	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666