JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LPCAT2_chr16_55504072_55591666	0/0	t0031	3679	2	2	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0032	3679	2	0	0	1	0	1	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0033	3741	2	1	1	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0034	3737	2	2	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0035	3737	2	0	0	1	0	1	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0036	3737	2	2	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0037	3675	2	0	0	2	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0038	3679	2	1	0	0	0	1	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0039	3679	2	0	0	1	0	1	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0040	3741	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0041	3675	1	0	1	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0042	3679	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0043	3741	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0044	3675	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0045	3679	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0046	3741	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0047	3741	1	1	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0048	3741	1	1	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0049	3741	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0050	3741	1	1	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0051	3678	1	1	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0052	3679	1	1	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0053	3675	1	1	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0054	3675	1	1	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0055	3679	1	1	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0056	3675	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0057	3741	1	0	0	0	0	1	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0058	3675	1	1	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0059	3678	1	1	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0060	3679	1	1	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0061	3741	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0062	3675	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0063	3679	1	1	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0064	3675	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0065	3737	1	1	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0066	3675	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0067	3737	1	1	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0068	3674	1	1	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0069	3679	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0070	3679	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0071	3741	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0072	3741	1	1	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0073	3675	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0074	3679	1	0	0	0	0	1	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0075	3679	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0076	3679	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	t0077	3679	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT3_chr12_6971185_7023476	1/1	t0001	772	249	77	43	98	8	21	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	t0002	772	19	5	0	14	0	0	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	t0003	772	5	0	0	4	0	1	copy fasta	LPCAT3	chr12	6971185	7023476