JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LPCAT3_chr12_6971185_7023476	0/0	t0004	772	2	2	0	0	0	0	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	t0005	772	1	0	0	0	0	1	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	t0006	772	1	1	0	0	0	0	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	t0007	772	1	1	0	0	0	0	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	t0008	772	1	1	0	0	0	0	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	t0009	772	1	0	1	0	0	0	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	t0010	772	1	1	0	0	0	0	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	t0011	772	1	0	0	0	0	1	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT4_chr15_34353633_34372196	0/1	t0001	591	226	62	41	95	6	21	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	1/0	t0002	591	213	28	34	111	12	27	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	t0003	594	5	5	0	0	0	0	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	t0004	591	2	1	1	0	0	0	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	t0005	591	1	0	0	1	0	0	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	t0006	591	1	1	0	0	0	0	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	t0007	594	1	1	0	0	0	0	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	t0008	591	1	0	0	1	0	0	copy fasta	LPCAT4	chr15	34353633	34372196
LPGAT1_chr1_211738457_211835763	0/1	t0001	6662	101	26	22	40	2	10	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0002	6662	48	4	11	19	6	8	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0003	6662	27	0	7	10	3	7	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0004	6667	24	0	1	23	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0005	6662	17	0	4	13	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0006	6667	15	0	2	5	1	7	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0007	6671	11	10	0	1	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0008	6662	8	6	2	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0009	6640	7	0	7	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0010	6667	7	0	0	4	0	3	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0011	6662	6	6	0	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0012	6662	6	0	2	4	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0013	6662	4	1	3	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0014	6667	3	0	0	3	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0015	6667	3	2	1	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0016	6661	3	0	1	0	2	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0017	6662	3	3	0	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0018	6662	3	3	0	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0019	6662	3	3	0	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0020	6662	2	2	0	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0021	6639	2	1	1	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0022	6662	2	2	0	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	1/0	t0023	6661	2	0	0	0	0	1	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0024	6671	2	1	1	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0025	6662	2	0	0	0	0	2	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0026	6662	1	0	0	1	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0027	6662	1	0	0	0	0	1	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0028	6662	1	0	0	1	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0029	6662	1	1	0	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0030	6662	1	1	0	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0031	6662	1	1	0	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0032	6640	1	0	1	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0033	6667	1	1	0	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0034	6667	1	0	0	0	0	1	copy fasta	LPGAT1	chr1	211738457	211835763