JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LPGAT1_chr1_211738457_211835763	0/0	t0035	6662	1	0	0	0	0	1	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0036	6662	1	0	0	0	0	1	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0037	6662	1	0	1	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0038	6671	1	1	0	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0039	6662	1	1	0	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0040	6663	1	0	1	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0041	6662	1	1	0	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0042	6662	1	0	1	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0043	6662	1	0	0	1	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0044	6662	1	1	0	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0045	6662	1	0	1	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	t0046	6662	1	0	0	1	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPIN1_chr2_11741632_11832409	1/0	t0001	2668	61	4	8	33	4	11	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0002	2667	48	13	15	8	6	6	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0003	2668	33	16	4	13	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0004	2667	33	2	6	22	1	2	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0005	2667	12	12	0	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0006	2667	11	10	1	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0007	2667	9	5	3	0	1	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0008	2666	8	6	2	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0009	2667	7	0	4	0	0	3	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0010	2667	7	4	3	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/1	t0011	2666	7	0	1	0	1	4	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0012	2668	5	1	1	2	0	1	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0013	2669	4	0	1	3	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0014	2667	4	0	0	3	0	1	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0015	2668	3	3	0	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0016	2669	3	0	0	3	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0017	2667	2	2	0	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0018	2667	1	1	0	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0019	2669	1	0	0	1	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0020	2668	1	0	0	1	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0021	2669	1	0	1	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0022	2668	1	1	0	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0023	2669	1	0	1	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0024	2668	1	0	1	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0025	2667	1	0	0	0	0	1	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0026	2666	1	1	0	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0027	2668	1	0	0	1	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0028	2668	1	1	0	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0029	2668	1	0	0	0	0	1	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0030	2667	1	1	0	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0031	2666	1	0	1	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0032	2667	1	0	0	0	1	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0033	2666	1	0	0	1	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0034	2668	1	1	0	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0035	2667	1	1	0	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0036	2668	1	0	0	1	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0037	2667	1	1	0	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	t0038	2665	1	0	1	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409