JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LPIN2_chr18_2911999_3018144	0/0	t0001	3363	32	1	4	20	1	6	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0002	3362	32	1	3	16	3	9	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0003	3362	17	1	2	12	1	1	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0004	3362	14	1	4	6	1	2	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0005	3360	13	2	2	9	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0006	3363	10	0	5	4	0	1	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0007	3363	9	0	7	0	0	2	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0008	3363	9	0	1	7	0	1	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0009	3360	8	0	1	6	0	1	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0010	3362	8	0	0	7	0	1	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0011	3362	8	0	3	5	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0012	3362	8	0	1	7	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0013	3362	7	2	0	3	0	2	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0014	3363	7	6	1	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0015	3362	7	7	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0016	3362	6	1	2	1	2	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0017	3363	6	0	0	5	0	1	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	1/0	t0018	3362	6	0	1	4	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0019	3362	5	2	0	3	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0020	3363	5	0	2	3	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0021	3362	4	0	0	4	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0022	3363	4	0	0	4	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0023	3361	4	4	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0024	3362	4	0	0	1	0	3	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0025	3362	4	0	0	4	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0026	3362	3	0	3	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0027	3360	3	3	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0028	3360	3	2	0	0	0	1	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0029	3363	3	1	1	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0030	3360	3	3	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0031	3362	3	1	1	0	1	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0032	3363	3	2	1	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0033	3362	3	2	1	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0034	3362	3	0	2	0	0	1	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0035	3362	2	0	0	2	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0036	3360	2	2	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0037	3362	2	0	1	0	1	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0038	3362	2	2	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0039	3362	2	2	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0040	3363	2	2	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0041	3360	2	2	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0042	3362	2	0	0	2	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0043	3361	2	0	0	2	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0044	3360	2	0	2	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0045	3360	2	0	1	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0046	3362	2	0	2	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0047	3366	2	0	0	2	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0048	3360	2	1	1	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0049	3360	2	0	2	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0050	3360	2	1	0	0	0	1	copy fasta	LPIN2	chr18	2911999	3018144