JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LPIN2_chr18_2911999_3018144	0/0	t0101	3360	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0102	3366	1	0	0	0	0	1	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0103	3361	1	1	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0104	3363	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0105	3363	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0106	3362	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0107	3360	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0108	3362	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0109	3362	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0110	3366	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0111	3362	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0112	3360	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0113	3362	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0114	3360	1	1	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0115	3362	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0116	3363	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0117	3360	1	1	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0118	3361	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0119	3362	1	0	1	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0120	3362	1	0	1	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0121	3360	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0122	3362	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0123	3362	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0124	3362	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0125	3360	1	1	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0126	3362	1	0	0	0	0	1	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0127	3362	1	0	0	0	0	1	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0128	3360	1	1	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0129	3361	1	0	1	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0130	3362	1	1	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0131	3360	1	0	1	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	t0132	3363	1	1	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN3_chr20_41335821_41365582	1/0	t0001	1907	80	14	18	23	8	16	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0002	1908	76	0	5	71	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0003	1907	74	10	11	37	4	12	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0004	1907	20	3	2	13	2	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0005	1908	19	5	7	1	3	3	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0006	1907	16	13	3	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0007	1909	16	0	5	11	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0008	1908	13	4	1	8	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0009	1907	12	0	0	11	0	1	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0010	1907	12	11	1	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0011	1908	7	3	3	1	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0012	1908	6	3	0	3	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0013	1907	5	4	0	0	0	1	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0014	1907	4	0	0	4	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0015	1908	3	0	0	2	0	1	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0016	1908	3	0	0	3	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0017	1908	3	3	0	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0018	1909	3	0	3	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582