JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LPIN3_chr20_41335821_41365582	0/0	t0019	1907	3	3	0	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0020	1909	3	2	0	1	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0021	1888	2	0	0	2	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0022	1907	2	0	1	1	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0023	1908	2	2	0	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0024	1908	2	2	0	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0025	1908	1	0	0	0	1	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0026	1907	1	0	1	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0027	1907	1	0	0	1	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0028	1907	1	1	0	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0029	1907	1	1	0	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0030	1908	1	0	0	1	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0031	1908	1	1	0	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0032	1908	1	0	0	1	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0033	1907	1	0	0	1	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0034	1907	1	0	1	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0035	1888	1	0	0	1	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0036	1839	1	0	0	0	0	1	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0037	1907	1	0	0	0	0	1	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0038	1908	1	0	0	1	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0039	1908	1	1	0	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0040	1908	1	0	0	1	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	t0041	1907	1	0	0	1	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/1	t0042	1907	1	0	0	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPL_chr8_19934253_19972259	1/1	t0001	2138	196	22	40	101	6	25	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0002	2138	44	11	15	6	4	8	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0003	2138	40	6	9	17	4	4	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0004	2140	31	3	2	21	1	4	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0005	2138	15	13	2	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0006	2140	11	11	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0007	2138	9	9	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0008	2140	6	5	1	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0009	2138	5	0	4	0	1	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0010	2138	5	0	0	5	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0011	2138	2	2	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0012	2138	2	2	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0013	2138	2	1	0	0	0	1	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0014	2138	2	2	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0015	2138	2	2	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0016	2138	2	1	1	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0017	2138	1	0	1	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0018	2138	1	0	1	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0019	2138	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0020	2138	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0021	2138	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0022	2138	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0023	2138	1	0	0	1	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0024	2138	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0025	2140	1	0	0	1	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	t0026	2138	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259