Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APOBEC3F_chr22_39035864_39060972	0/0	t0026	3376	2	2	0	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0027	3375	2	1	1	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0028	3376	1	1	0	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0029	3375	1	1	0	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0030	3376	1	1	0	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0031	3374	1	0	0	1	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0032	3373	1	0	0	0	0	1	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0033	3374	1	0	1	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0034	3374	1	0	1	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0035	3373	1	1	0	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0036	3374	1	0	0	1	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0037	3374	1	0	0	0	1	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0038	3374	1	0	0	1	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0039	3373	1	0	0	1	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0040	3374	1	0	0	1	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0041	3374	1	0	0	1	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0042	3374	1	0	0	1	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0043	3375	1	0	0	1	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0044	3575	1	0	0	0	0	1	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0045	3372	1	1	0	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0046	3376	1	0	0	0	0	1	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0047	3375	1	1	0	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0048	3375	1	0	0	0	0	1	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0049	3375	1	0	0	1	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0050	3375	1	0	0	1	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0051	3375	1	0	0	1	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0052	3375	1	0	0	1	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0053	3373	1	1	0	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0054	3374	1	1	0	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0055	3375	1	1	0	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0056	3374	1	1	0	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0057	3375	1	0	0	1	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	t0058	3374	1	1	0	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3G_chr22_39072275_39092743	1/1	t0001	410	409	83	71	198	18	37	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	t0002	410	7	7	0	0	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	t0003	410	2	0	0	0	0	2	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	t0004	410	2	0	0	2	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	t0005	410	1	0	0	0	0	1	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	t0006	410	1	0	0	1	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	t0007	410	1	0	0	1	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	t0008	410	1	0	1	0	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3H_chr22_39092244_39109067	1/0	t0001	478	214	8	52	119	6	28	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/1	t0002	478	107	20	20	47	5	14	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	t0003	478	76	46	6	19	3	2	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	t0004	478	5	4	1	0	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	t0005	478	3	3	0	0	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	t0006	478	3	3	0	0	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	t0007	478	3	2	1	0	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	t0008	478	2	2	0	0	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	t0009	478	1	1	0	0	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067