JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LPO_chr17_58233584_58273518	1/1	t0001	683	320	89	54	139	12	24	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	t0002	683	2	2	0	0	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	t0003	683	2	2	0	0	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	t0004	683	2	0	2	0	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	t0005	683	1	0	0	1	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	t0006	683	1	1	0	0	0	0	copy fasta	LPO	chr17	58233584	58273518
LPP_chr3_188149157_188895671	0/0	t0001	16472	5	0	3	0	0	2	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0002	16479	2	1	1	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0003	16521	2	2	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0004	16523	2	2	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0005	16479	2	0	1	0	1	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0006	16475	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0007	16486	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0008	16519	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0009	16480	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0010	16479	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0011	16473	1	0	0	1	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0012	16496	1	0	1	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0013	16481	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0014	16482	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0015	16481	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0016	16499	1	0	0	0	0	1	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0017	16479	1	0	0	0	0	1	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0018	16473	1	0	1	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0019	16480	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0020	16477	1	0	0	0	0	1	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0021	16476	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0022	16478	1	0	1	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0023	16472	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0024	16473	1	0	0	1	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0025	16478	1	0	0	0	0	1	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0026	16480	1	0	0	0	0	1	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0027	16480	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0028	16527	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0029	16520	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/1	t0030	16524	1	0	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0031	16523	1	0	0	0	1	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0032	16520	1	0	1	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0033	16522	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0034	16518	1	0	1	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0035	16519	1	0	1	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0036	16523	1	0	0	1	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0037	16512	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0038	16514	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0039	16502	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0040	16525	1	0	0	0	0	1	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0041	16518	1	0	1	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0042	16498	1	0	0	0	0	1	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0043	16522	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0044	16498	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671