JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LPP_chr3_188149157_188895671	0/0	t0045	16487	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	1/0	t0046	16478	1	0	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0047	16477	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0048	16476	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0049	16519	1	0	0	0	0	1	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0050	16519	1	0	1	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0051	16479	1	0	1	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0052	16482	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0053	16482	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0054	16482	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0055	16478	1	0	0	1	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0056	16477	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0057	16481	1	0	0	1	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0058	16496	1	0	0	1	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0059	16483	1	0	1	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0060	16485	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0061	16480	1	0	1	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0062	16493	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0063	16521	1	0	1	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0064	16521	1	0	0	0	0	1	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0065	16504	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0066	16526	1	0	0	0	0	1	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0067	16525	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	t0068	16520	1	0	1	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPXN_chr11_58521871_58580856	1/1	t0001	668	322	84	59	139	10	28	copy fasta	LPXN	chr11	58521871	58580856
LPXN_chr11_58521871_58580856	0/0	t0002	668	1	1	0	0	0	0	copy fasta	LPXN	chr11	58521871	58580856
LPXN_chr11_58521871_58580856	0/0	t0003	668	1	1	0	0	0	0	copy fasta	LPXN	chr11	58521871	58580856
LPXN_chr11_58521871_58580856	0/0	t0004	668	1	1	0	0	0	0	copy fasta	LPXN	chr11	58521871	58580856
LPXN_chr11_58521871_58580856	0/0	t0005	668	1	0	0	1	0	0	copy fasta	LPXN	chr11	58521871	58580856
LPXN_chr11_58521871_58580856	0/0	t0006	668	1	1	0	0	0	0	copy fasta	LPXN	chr11	58521871	58580856
LPXN_chr11_58521871_58580856	0/0	t0007	668	1	0	1	0	0	0	copy fasta	LPXN	chr11	58521871	58580856
LRATD1_chr2_14627717_14645041	1/1	t0001	5441	154	8	42	77	7	18	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0002	5442	73	17	11	28	3	14	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0003	5444	44	5	7	29	3	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0004	5444	16	0	0	16	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0005	5445	9	6	3	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0006	5442	9	1	0	6	0	2	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0007	5446	8	7	1	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0008	5443	8	4	2	1	0	1	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0009	5440	7	3	3	1	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0010	5445	6	6	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0011	5444	6	6	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0012	5442	5	0	0	0	0	5	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0013	5444	4	4	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0014	5443	4	0	1	2	0	1	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0015	5443	4	4	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0016	5442	3	0	1	0	2	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0017	5445	3	2	1	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0018	5443	3	3	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0019	5445	3	0	0	3	0	0	copy fasta	LRATD1	chr2	14627717	14645041