JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRATD1_chr2_14627717_14645041	0/0	t0020	5444	3	3	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0021	5445	2	0	0	2	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0022	5446	2	2	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0023	5448	2	2	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0024	5441	2	0	0	2	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0025	5441	2	0	1	1	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0026	5440	2	2	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0027	5441	2	0	0	0	1	1	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0028	5441	1	0	0	1	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0029	5444	1	1	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0030	5443	1	1	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0031	5445	1	1	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0032	5441	1	0	0	1	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0033	5448	1	1	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0034	5443	1	0	0	1	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0035	5441	1	0	0	0	0	1	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0036	5441	1	1	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0037	5441	1	0	0	1	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0038	5448	1	1	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0039	5450	1	1	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0040	5440	1	0	0	0	0	1	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0041	5446	1	1	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0042	5444	1	0	0	1	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0043	5443	1	1	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0044	5445	1	1	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0045	5441	1	0	0	0	0	1	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0046	5442	1	0	1	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0047	5442	1	1	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0048	5444	1	0	0	1	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0049	5446	1	1	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0050	5441	1	0	0	0	0	1	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0051	5444	1	0	0	1	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0052	5450	1	1	0	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	t0053	5441	1	0	0	1	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD2_chr8_126547443_126563478	1/0	t0001	4556	138	22	36	47	8	24	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0002	4556	56	7	0	47	1	1	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/1	t0003	4556	38	0	15	16	3	3	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0004	4556	36	0	0	36	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0005	4555	27	3	1	19	1	3	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0006	4556	26	0	12	14	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0007	4555	18	15	1	2	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0008	4555	7	6	1	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0009	4555	7	7	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0010	4556	7	0	0	7	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0011	4555	5	4	1	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0012	4555	5	5	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0013	4556	3	3	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0014	4555	3	3	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0015	4555	3	3	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0016	4556	3	3	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478