JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRATD2_chr8_126547443_126563478	0/0	t0017	4556	3	0	0	3	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0018	4556	3	0	1	0	2	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0019	4555	2	2	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0020	4556	2	0	2	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0021	4555	2	2	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0022	4556	2	0	0	2	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0023	4556	2	0	0	0	0	2	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0024	4556	2	0	1	1	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0025	4556	2	0	0	2	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0026	4557	2	0	0	2	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0027	4556	2	0	0	2	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0028	4556	1	0	0	1	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0029	4555	1	1	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0030	4556	1	0	0	1	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0031	4556	1	1	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0032	4555	1	0	0	1	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0033	4555	1	1	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0034	4555	1	0	0	1	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0035	4555	1	0	0	1	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0036	4555	1	1	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0037	4555	1	1	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0038	4556	1	1	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0039	4556	1	0	0	1	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0040	4556	1	1	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0041	4556	1	0	0	0	1	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0042	4556	1	0	0	0	0	1	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0043	4556	1	0	0	1	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0044	4556	1	0	1	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0045	4556	1	1	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0046	4556	1	0	0	1	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0047	4556	1	0	1	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0048	4557	1	0	0	1	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0049	4556	1	0	0	0	0	1	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0050	4556	1	0	0	1	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0051	4557	1	0	0	1	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0052	4555	1	1	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0053	4556	1	0	0	0	0	1	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0054	4556	1	0	0	1	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	t0055	4556	1	0	1	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRAT_chr4_154739000_154758120	0/0	t0001	4210	116	6	15	82	6	7	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	1/0	t0002	4208	96	20	18	36	4	17	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0003	4211	33	6	6	16	1	4	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0004	4221	29	4	11	7	1	6	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0005	4207	22	16	5	1	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0006	4209	21	5	3	8	1	4	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0007	4209	10	2	0	6	0	2	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0008	4222	10	2	5	2	0	1	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0009	4208	6	5	1	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0010	4198	4	4	0	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0011	4209	3	2	1	0	0	0	copy fasta	LRAT	chr4	154739000	154758120