JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRAT_chr4_154739000_154758120	0/0	t0012	4208	3	1	0	1	0	1	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0013	4221	3	0	3	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0014	4208	3	3	0	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0015	4207	2	2	0	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0016	4209	2	0	0	2	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0017	4211	2	0	0	1	1	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0018	4210	2	2	0	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0019	4210	2	2	0	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0020	4206	2	2	0	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0021	4194	2	0	2	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0022	4221	2	2	0	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0023	4207	1	1	0	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0024	4206	1	1	0	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0025	4240	1	1	0	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0026	4211	1	0	0	1	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0027	4211	1	0	0	0	0	1	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0028	4206	1	1	0	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0029	4211	1	0	0	0	0	1	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/1	t0030	4208	1	0	0	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0031	4210	1	0	0	0	0	1	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0032	4208	1	1	0	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0033	4211	1	1	0	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0034	4210	1	0	0	1	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0035	4210	1	0	0	1	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0036	4211	1	1	0	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0037	4223	1	1	0	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0038	4210	1	0	0	1	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0039	4210	1	0	0	1	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0040	4221	1	0	1	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0041	4221	1	0	1	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0042	4224	1	0	1	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0043	4222	1	0	1	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0044	4221	1	0	0	0	0	1	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	t0045	4210	1	0	0	1	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRBA_chr4_150259435_151020284	0/1	t0001	1588	73	25	10	28	2	7	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	1/0	t0002	1590	50	17	1	28	2	1	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	t0003	1582	44	25	4	15	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	t0004	1590	3	0	0	3	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	t0005	1593	3	0	0	3	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	t0006	1590	2	2	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	t0007	1585	2	1	1	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	t0008	1582	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	t0009	1571	1	0	0	1	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	t0010	1585	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRCH1_chr13_46548170_46749898	0/0	t0001	3277	112	8	26	58	6	14	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0002	3278	33	6	7	18	0	2	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/1	t0003	3277	28	9	6	5	2	5	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	1/0	t0004	3278	28	14	0	9	0	4	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0005	3277	8	0	0	8	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0006	3279	7	7	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898