JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRCH1_chr13_46548170_46749898	0/0	t0007	3272	6	5	1	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0008	3278	5	5	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0009	3277	4	3	1	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0010	3278	4	4	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0011	3278	3	1	2	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0012	3277	3	2	1	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0013	3278	3	3	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0014	3277	3	0	2	0	0	1	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0015	3277	3	0	1	0	2	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0016	3279	2	2	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0017	3278	2	0	0	0	0	2	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0018	3278	2	0	0	2	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0019	3277	2	2	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0020	3278	2	2	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0021	3280	1	1	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0022	3277	1	1	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0023	3278	1	1	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0024	3272	1	1	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0025	3272	1	1	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0026	3277	1	0	1	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0027	3278	1	1	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0028	3277	1	0	1	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0029	3277	1	1	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0030	3277	1	0	1	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0031	3278	1	1	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0032	3278	1	0	0	1	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0033	3278	1	0	0	1	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	t0034	3278	1	1	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH2_chrX_115105616_115239096	1/1	t0001	2656	142	26	27	62	5	20	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	t0002	2655	69	29	12	20	0	8	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	t0003	2655	17	13	2	1	0	1	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	t0004	2655	2	0	0	2	0	0	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	t0005	2656	2	2	0	0	0	0	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	t0006	2655	2	2	0	0	0	0	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	t0007	2655	1	0	0	1	0	0	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	t0008	2655	1	0	0	1	0	0	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	t0009	2655	1	0	0	0	0	1	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	t0010	2655	1	0	1	0	0	0	copy fasta	LRCH2	chrX	115105616	115239096
LRCH3_chr3_197786254_197893436	1/0	t0001	4796	119	10	35	50	6	17	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0002	4750	22	7	6	4	1	4	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0003	4835	11	0	3	0	1	7	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0004	4797	9	1	2	3	0	3	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0005	4797	8	2	2	3	0	1	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0006	4747	8	8	0	0	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0007	4796	7	0	2	0	2	3	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0008	4649	7	5	2	0	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0009	4751	6	2	1	3	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0010	4749	5	0	0	3	0	2	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0011	4796	5	4	1	0	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0012	4750	4	2	0	2	0	0	copy fasta	LRCH3	chr3	197786254	197893436