JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRCH3_chr3_197786254_197893436	0/0	t0063	4647	1	0	0	1	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0064	4650	1	1	0	0	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0065	4649	1	1	0	0	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0066	4649	1	1	0	0	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0067	4648	1	1	0	0	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0068	4647	1	0	0	1	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0069	4796	1	0	0	1	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0070	4794	1	0	1	0	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0071	4796	1	0	0	0	0	1	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0072	4797	1	0	0	1	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	t0073	4835	1	0	1	0	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH4_chr7_100569011_100591129	1/1	t0001	1126	260	54	37	122	13	32	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0002	1128	32	0	10	15	1	6	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0003	1126	30	18	5	1	2	4	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0004	1128	3	0	0	0	0	3	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0005	1126	3	3	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0006	1127	3	0	0	3	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0007	1160	3	3	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0008	1128	2	0	0	0	1	1	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0009	1126	2	2	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0010	1136	2	2	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0011	1140	2	2	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0012	1156	2	1	1	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0013	1124	2	0	0	2	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0014	1128	1	0	0	1	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0015	1126	1	0	0	1	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0016	1126	1	0	0	1	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0017	1127	1	1	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0018	1127	1	0	0	1	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0019	1126	1	0	0	0	1	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0020	1126	1	1	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0021	1126	1	0	1	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0022	1126	1	0	0	1	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0023	1126	1	0	0	0	0	1	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0024	1128	1	0	0	1	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0025	1126	1	0	1	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0026	1136	1	1	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0027	1144	1	1	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0028	1156	1	1	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0029	1128	1	0	1	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0030	1172	1	1	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0031	1166	1	1	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0032	1138	1	0	0	0	0	1	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0033	1150	1	0	1	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0034	1154	1	0	1	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0035	1162	1	1	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0036	1162	1	1	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	t0037	1124	1	0	0	1	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCOL1_chr12_132598151_132615582	0/0	t0001	525	247	52	41	117	11	26	copy fasta	LRCOL1	chr12	132598151	132615582
LRCOL1_chr12_132598151_132615582	1/1	t0002	525	101	17	23	37	3	19	copy fasta	LRCOL1	chr12	132598151	132615582