JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRCOL1_chr12_132598151_132615582	0/0	t0003	525	30	20	8	0	2	0	copy fasta	LRCOL1	chr12	132598151	132615582
LRCOL1_chr12_132598151_132615582	0/0	t0004	525	4	0	3	0	0	1	copy fasta	LRCOL1	chr12	132598151	132615582
LRCOL1_chr12_132598151_132615582	0/0	t0005	525	4	4	0	0	0	0	copy fasta	LRCOL1	chr12	132598151	132615582
LRCOL1_chr12_132598151_132615582	0/0	t0006	525	2	1	1	0	0	0	copy fasta	LRCOL1	chr12	132598151	132615582
LRCOL1_chr12_132598151_132615582	0/0	t0007	525	1	1	0	0	0	0	copy fasta	LRCOL1	chr12	132598151	132615582
LRCOL1_chr12_132598151_132615582	0/0	t0008	525	1	1	0	0	0	0	copy fasta	LRCOL1	chr12	132598151	132615582
LRFN1_chr19_39301566_39325863	0/0	t0001	1266	57	12	14	24	3	4	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	1/0	t0002	1264	39	14	6	10	4	4	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0003	1268	34	4	14	13	2	1	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0004	1270	25	2	2	14	1	6	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0005	1274	23	0	3	17	0	3	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0006	1260	19	19	0	0	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/1	t0007	1262	19	7	2	5	0	4	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0008	1272	14	4	4	5	0	1	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0009	1260	13	6	1	4	1	1	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0010	1258	5	5	0	0	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0011	1260	3	3	0	0	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0012	1258	2	2	0	0	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0013	1265	2	0	1	1	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0014	1265	2	0	0	1	0	1	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0015	1269	2	0	0	2	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0016	1278	2	0	1	1	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0017	1256	2	0	0	2	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0018	1252	2	0	0	0	2	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0019	1268	2	1	0	0	1	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0020	1262	1	1	0	0	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0021	1262	1	1	0	0	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0022	1264	1	0	0	1	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0023	1269	1	0	0	1	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0024	1269	1	0	0	0	0	1	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0025	1275	1	0	1	0	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0026	1264	1	0	1	0	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0027	1258	1	1	0	0	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0028	1266	1	0	0	1	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0029	1256	1	1	0	0	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	t0030	1260	1	1	0	0	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN2_chr6_40386591_40592364	1/1	t0001	795	178	63	26	65	4	18	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	t0002	795	38	6	10	14	7	1	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	t0003	795	3	0	0	3	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	t0004	795	2	0	0	2	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	t0005	795	2	0	0	0	1	1	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	t0006	795	2	0	0	2	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	t0007	795	1	1	0	0	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	t0008	795	1	1	0	0	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	t0009	795	1	1	0	0	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN3_chr19_35931374_35951624	0/1	t0001	2804	234	31	57	103	9	33	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0002	2804	45	0	4	38	1	2	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0003	2803	43	0	13	23	5	2	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0004	2805	22	6	0	15	0	1	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0005	2804	13	12	1	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624