JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRFN3_chr19_35931374_35951624	0/0	t0006	2803	10	6	1	1	2	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0007	2804	8	7	1	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0008	2804	7	6	0	1	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0009	2804	5	0	0	5	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0010	2804	4	3	0	1	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0011	2804	3	0	0	1	1	1	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0012	2804	3	3	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0013	2815	2	2	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0014	2804	2	2	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0015	2793	2	2	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0016	2804	1	0	0	1	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0017	2804	1	1	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0018	2804	1	1	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0019	2804	1	0	0	1	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0020	2804	1	0	0	1	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0021	2804	1	0	0	1	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0022	2804	1	0	0	1	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0023	2805	1	1	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0024	2803	1	1	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0025	2804	1	1	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0026	2805	1	0	0	1	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0027	2804	1	1	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0028	2804	1	0	1	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	t0029	2803	1	0	0	0	0	1	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	1/0	t0030	2804	1	0	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN4_chr11_66852064_66865475	1/1	t0001	962	375	81	64	178	14	36	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	t0002	962	4	4	0	0	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	t0003	962	3	0	0	3	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	t0004	962	3	2	1	0	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	t0005	962	1	0	1	0	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	t0006	962	1	0	0	1	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	t0007	962	1	1	0	0	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN5_chr14_41601876_41909549	1/0	t0001	2258	125	20	25	61	2	16	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/1	t0002	2257	50	11	24	2	3	9	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0003	2257	44	8	7	29	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0004	2258	19	18	1	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0005	2260	7	7	0	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0006	2257	5	5	0	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0007	2258	5	1	1	2	0	1	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0008	2255	3	3	0	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0009	2258	2	2	0	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0010	2260	2	0	0	2	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0011	2244	1	1	0	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0012	2258	1	1	0	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0013	2257	1	1	0	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0014	2257	1	0	1	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0015	2258	1	1	0	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0016	2258	1	0	1	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0017	2258	1	1	0	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0018	2258	1	0	0	0	1	0	copy fasta	LRFN5	chr14	41601876	41909549