Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APOBEC3H_chr22_39092244_39109067	0/0	t0010	478	1	1	0	0	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	t0011	478	1	1	0	0	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	t0012	478	1	0	0	1	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	t0013	477	1	1	0	0	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC4_chr1_183641275_183658316	1/1	t0001	1679	242	48	48	107	9	28	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0002	1681	70	21	17	18	4	10	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0003	1679	21	9	1	9	0	2	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0004	1679	9	8	1	0	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0005	1679	7	0	0	7	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0006	1679	6	0	0	6	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0007	1679	3	3	0	0	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0008	1679	3	2	1	0	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0009	1679	3	3	0	0	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0010	1679	2	0	0	2	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0011	1681	2	0	0	2	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0012	1681	1	0	1	0	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0013	1679	1	0	0	0	1	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0014	1679	1	0	0	1	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0015	1679	1	0	0	1	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0016	1679	1	0	0	1	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0017	1679	1	0	0	1	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0018	1679	1	0	0	1	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0019	1679	1	0	0	1	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0020	1681	1	0	1	0	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	t0021	1679	1	0	0	1	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBR_chr16_28489643_28503964	0/1	t0001	499	211	45	51	92	7	15	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	1/0	t0002	499	193	48	22	86	5	31	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	t0003	499	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	t0004	499	1	0	1	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOB_chr2_20996429_21049073	1/1	t0001	430	338	85	66	137	12	36	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	t0002	430	4	4	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	t0003	430	3	0	3	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	t0004	430	3	3	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	t0005	430	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	t0006	430	1	0	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOC1_chr19_44909608_44924346	1/1	t0001	263	410	79	80	189	18	42	copy fasta	APOC1	chr19	44909608	44924346
APOC1_chr19_44909608_44924346	0/0	t0002	263	20	19	1	0	0	0	copy fasta	APOC1	chr19	44909608	44924346
APOC1_chr19_44909608_44924346	0/0	t0003	263	4	0	1	0	0	3	copy fasta	APOC1	chr19	44909608	44924346
APOC1_chr19_44909608_44924346	0/0	t0004	263	2	0	0	1	0	1	copy fasta	APOC1	chr19	44909608	44924346
APOC2_chr19_44941051_44954565	1/0	t0001	355	246	66	52	88	10	29	copy fasta	APOC2	chr19	44941051	44954565
APOC2_chr19_44941051_44954565	0/1	t0002	356	140	16	25	81	4	13	copy fasta	APOC2	chr19	44941051	44954565
APOC2_chr19_44941051_44954565	0/0	t0003	355	5	4	1	0	0	0	copy fasta	APOC2	chr19	44941051	44954565
APOC2_chr19_44941051_44954565	0/0	t0004	356	4	4	0	0	0	0	copy fasta	APOC2	chr19	44941051	44954565
APOC2_chr19_44941051_44954565	0/0	t0005	355	1	1	0	0	0	0	copy fasta	APOC2	chr19	44941051	44954565
APOC2_chr19_44941051_44954565	0/0	t0006	356	1	1	0	0	0	0	copy fasta	APOC2	chr19	44941051	44954565
APOC2_chr19_44941051_44954565	0/0	t0007	355	1	0	0	1	0	0	copy fasta	APOC2	chr19	44941051	44954565
APOC3_chr11_116824907_116838072	0/0	t0001	236	229	63	31	113	6	16	copy fasta	APOC3	chr11	116824907	116838072
APOC3_chr11_116824907_116838072	1/0	t0002	236	117	20	15	62	2	17	copy fasta	APOC3	chr11	116824907	116838072
APOC3_chr11_116824907_116838072	0/1	t0003	236	103	9	30	38	10	15	copy fasta	APOC3	chr11	116824907	116838072
APOC3_chr11_116824907_116838072	0/0	t0004	236	1	0	0	1	0	0	copy fasta	APOC3	chr11	116824907	116838072