JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRFN5_chr14_41601876_41909549	0/0	t0019	2258	1	0	1	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0020	2260	1	1	0	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0021	2258	1	1	0	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0022	2260	1	1	0	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0023	2260	1	1	0	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0024	2257	1	0	0	1	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0025	2257	1	1	0	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0026	2258	1	1	0	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0027	2258	1	0	0	1	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	t0028	2258	1	0	1	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRG1_chr19_4531402_4545036	1/1	t0001	1562	336	47	74	162	14	37	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0002	1561	17	17	0	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0003	1561	11	3	3	0	1	4	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0004	1561	8	7	1	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0005	1561	7	7	0	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0006	1562	7	0	0	7	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0007	1562	5	0	4	0	1	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0008	1562	4	4	0	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0009	1562	4	0	0	0	0	4	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0010	1561	4	4	0	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0011	1562	3	3	0	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0012	1550	2	0	1	0	0	1	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0013	1562	2	2	0	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0014	1562	1	0	0	0	0	1	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0015	1562	1	0	0	0	0	1	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0016	1561	1	1	0	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0017	1562	1	0	0	1	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0018	1562	1	0	0	1	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0019	1562	1	0	0	0	0	1	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0020	1552	1	0	1	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0021	1562	1	0	0	0	0	1	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0022	1562	1	0	0	1	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	t0023	1562	1	1	0	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRGUK_chr7_134122340_134269595	1/0	t0001	649	112	17	17	60	3	14	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/1	t0002	649	51	4	16	18	3	9	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	t0003	649	36	16	3	16	0	1	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	t0004	649	19	13	4	0	0	2	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	t0005	649	1	0	0	0	0	1	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	t0006	649	1	0	0	0	0	1	copy fasta	LRGUK	chr7	134122340	134269595
LRIF1_chr1_110942190_110968922	1/1	t0001	1004	186	46	30	75	8	25	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	t0002	1004	116	7	20	77	3	9	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	t0003	1005	55	2	14	32	1	6	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	t0004	1005	41	1	4	30	2	4	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	t0005	1004	31	31	0	0	0	0	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	t0006	1004	4	0	0	2	0	2	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	t0007	1004	2	2	0	0	0	0	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	t0008	1004	2	0	1	0	0	1	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	t0009	1005	2	0	0	2	0	0	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	t0010	1004	1	1	0	0	0	0	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	t0011	1004	1	0	0	1	0	0	copy fasta	LRIF1	chr1	110942190	110968922